Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL28A1Q2UY09 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
COL28A1Q2UY09 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL28A1Q2UY09 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC14.78□□□□□ -0.04
COL28A1Q2UY09 AC069218.1-201ENST00000435269 762 ntBASIC14.78□□□□□ -0.04
COL28A1Q2UY09 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL28A1Q2UY09 AC134698.3-201ENST00000523880 214 ntBASIC14.78□□□□□ -0.04
COL28A1Q2UY09 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL28A1Q2UY09 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC14.78□□□□□ -0.04
COL28A1Q2UY09 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC14.78□□□□□ -0.04
COL28A1Q2UY09 FGFR3P5-201ENST00000564496 886 ntBASIC14.78□□□□□ -0.04
COL28A1Q2UY09 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC14.78□□□□□ -0.04
COL28A1Q2UY09 AL096828.3-201ENST00000615354 462 ntBASIC14.78□□□□□ -0.04
COL28A1Q2UY09 AC005252.2-201ENST00000624630 1141 ntBASIC14.78□□□□□ -0.04
COL28A1Q2UY09 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC14.78□□□□□ -0.04
COL28A1Q2UY09 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
COL28A1Q2UY09 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC14.78□□□□□ -0.04
COL28A1Q2UY09 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL28A1Q2UY09 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
COL28A1Q2UY09 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL28A1Q2UY09 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC14.78□□□□□ -0.04
COL28A1Q2UY09 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
COL28A1Q2UY09 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL28A1Q2UY09 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC14.78□□□□□ -0.04
COL28A1Q2UY09 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL28A1Q2UY09 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL28A1Q2UY09 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL28A1Q2UY09 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
COL28A1Q2UY09 BLK-205ENST00000529894 2017 ntTSL 5 BASIC14.78□□□□□ -0.04
COL28A1Q2UY09 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC14.78□□□□□ -0.04
COL28A1Q2UY09 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
COL28A1Q2UY09 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC14.77□□□□□ -0.04
COL28A1Q2UY09 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
COL28A1Q2UY09 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
COL28A1Q2UY09 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
COL28A1Q2UY09 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC14.77□□□□□ -0.04
COL28A1Q2UY09 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC14.77□□□□□ -0.04
COL28A1Q2UY09 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
COL28A1Q2UY09 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC14.77□□□□□ -0.04
COL28A1Q2UY09 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
COL28A1Q2UY09 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC14.77□□□□□ -0.04
COL28A1Q2UY09 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.04
COL28A1Q2UY09 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
COL28A1Q2UY09 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
COL28A1Q2UY09 AC006480.2-201ENST00000609770 1337 ntBASIC14.77□□□□□ -0.04
COL28A1Q2UY09 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
COL28A1Q2UY09 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC14.77□□□□□ -0.04
COL28A1Q2UY09 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
COL28A1Q2UY09 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
COL28A1Q2UY09 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.05
COL28A1Q2UY09 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
COL28A1Q2UY09 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
COL28A1Q2UY09 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC14.77□□□□□ -0.05
COL28A1Q2UY09 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
COL28A1Q2UY09 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC14.77□□□□□ -0.05
COL28A1Q2UY09 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
COL28A1Q2UY09 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC14.77□□□□□ -0.05
COL28A1Q2UY09 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC14.77□□□□□ -0.05
COL28A1Q2UY09 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC14.77□□□□□ -0.05
COL28A1Q2UY09 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC14.77□□□□□ -0.05
COL28A1Q2UY09 EEF1DP6-201ENST00000449232 372 ntBASIC14.77□□□□□ -0.05
COL28A1Q2UY09 AC104784.1-201ENST00000473096 294 ntBASIC14.77□□□□□ -0.05
COL28A1Q2UY09 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
COL28A1Q2UY09 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC14.77□□□□□ -0.05
COL28A1Q2UY09 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC14.77□□□□□ -0.05
COL28A1Q2UY09 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC14.77□□□□□ -0.05
COL28A1Q2UY09 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
COL28A1Q2UY09 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC14.77□□□□□ -0.05
COL28A1Q2UY09 AC079336.7-201ENST00000623428 1078 ntBASIC14.77□□□□□ -0.05
COL28A1Q2UY09 AC138951.2-201ENST00000623455 1161 ntBASIC14.77□□□□□ -0.05
COL28A1Q2UY09 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
COL28A1Q2UY09 VILL-207ENST00000465644 1857 ntTSL 5 BASIC14.77□□□□□ -0.05
COL28A1Q2UY09 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC14.77□□□□□ -0.05
COL28A1Q2UY09 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
COL28A1Q2UY09 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
COL28A1Q2UY09 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC14.77□□□□□ -0.05
COL28A1Q2UY09 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
COL28A1Q2UY09 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
COL28A1Q2UY09 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC14.77□□□□□ -0.05
COL28A1Q2UY09 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC14.77□□□□□ -0.05
COL28A1Q2UY09 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC14.77□□□□□ -0.05
COL28A1Q2UY09 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
COL28A1Q2UY09 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
COL28A1Q2UY09 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
COL28A1Q2UY09 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
COL28A1Q2UY09 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
COL28A1Q2UY09 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC14.77□□□□□ -0.05
COL28A1Q2UY09 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
COL28A1Q2UY09 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
COL28A1Q2UY09 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms