Protein–RNA interactions for Protein: P02708

CHRNA1, Acetylcholine receptor subunit alpha, humanhuman

Predictions only

Length 482 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1P02708 AC091812.3-201ENST00000621362 345 ntBASIC16.49■□□□□ 0.23
CHRNA1P02708 AC004923.1-202ENST00000642106 209 ntBASIC16.49■□□□□ 0.23
CHRNA1P02708 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.49■□□□□ 0.23
CHRNA1P02708 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHRNA1P02708 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHRNA1P02708 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHRNA1P02708 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC16.49■□□□□ 0.23
CHRNA1P02708 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CHRNA1P02708 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHRNA1P02708 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC16.49■□□□□ 0.23
CHRNA1P02708 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHRNA1P02708 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHRNA1P02708 AC011840.2-201ENST00000563063 1520 ntBASIC16.49■□□□□ 0.23
CHRNA1P02708 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16.49■□□□□ 0.23
CHRNA1P02708 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHRNA1P02708 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHRNA1P02708 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC16.49■□□□□ 0.23
CHRNA1P02708 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CHRNA1P02708 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC16.48■□□□□ 0.23
CHRNA1P02708 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CHRNA1P02708 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC16.48■□□□□ 0.23
CHRNA1P02708 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC16.48■□□□□ 0.23
CHRNA1P02708 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
CHRNA1P02708 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CHRNA1P02708 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CHRNA1P02708 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
CHRNA1P02708 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC16.48■□□□□ 0.23
CHRNA1P02708 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CHRNA1P02708 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CHRNA1P02708 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
CHRNA1P02708 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CHRNA1P02708 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CHRNA1P02708 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC16.48■□□□□ 0.23
CHRNA1P02708 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CHRNA1P02708 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CHRNA1P02708 NPPA-201ENST00000376476 728 ntTSL 3 BASIC16.48■□□□□ 0.23
CHRNA1P02708 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC16.48■□□□□ 0.23
CHRNA1P02708 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC16.48■□□□□ 0.23
CHRNA1P02708 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC16.48■□□□□ 0.23
CHRNA1P02708 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC16.48■□□□□ 0.23
CHRNA1P02708 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
CHRNA1P02708 RN7SL190P-201ENST00000582519 257 ntBASIC16.48■□□□□ 0.23
CHRNA1P02708 RN7SL163P-201ENST00000583100 276 ntBASIC16.48■□□□□ 0.23
CHRNA1P02708 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC16.48■□□□□ 0.23
CHRNA1P02708 CU633904.3-201ENST00000624042 1029 ntBASIC16.48■□□□□ 0.23
CHRNA1P02708 RETN-203ENST00000629642 400 ntTSL 5 BASIC16.48■□□□□ 0.23
CHRNA1P02708 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CHRNA1P02708 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CHRNA1P02708 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CHRNA1P02708 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CHRNA1P02708 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CHRNA1P02708 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
CHRNA1P02708 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC16.48■□□□□ 0.23
CHRNA1P02708 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC16.48■□□□□ 0.23
CHRNA1P02708 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC16.48■□□□□ 0.23
CHRNA1P02708 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
CHRNA1P02708 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
CHRNA1P02708 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CHRNA1P02708 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC16.48■□□□□ 0.23
CHRNA1P02708 WARS-232ENST00000556645 2508 ntTSL 5 BASIC16.48■□□□□ 0.23
CHRNA1P02708 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC16.48■□□□□ 0.23
CHRNA1P02708 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CHRNA1P02708 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CHRNA1P02708 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CHRNA1P02708 AC012508.2-201ENST00000567613 1472 ntBASIC16.48■□□□□ 0.23
CHRNA1P02708 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CHRNA1P02708 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
CHRNA1P02708 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
CHRNA1P02708 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
CHRNA1P02708 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
CHRNA1P02708 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
CHRNA1P02708 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
CHRNA1P02708 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CHRNA1P02708 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
CHRNA1P02708 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC16.47■□□□□ 0.23
CHRNA1P02708 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
CHRNA1P02708 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CHRNA1P02708 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CHRNA1P02708 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC16.47■□□□□ 0.23
CHRNA1P02708 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC16.47■□□□□ 0.23
CHRNA1P02708 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
CHRNA1P02708 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CHRNA1P02708 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC16.47■□□□□ 0.23
CHRNA1P02708 RN7SKP230-201ENST00000365642 335 ntBASIC16.47■□□□□ 0.23
CHRNA1P02708 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
CHRNA1P02708 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CHRNA1P02708 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
CHRNA1P02708 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CHRNA1P02708 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC16.47■□□□□ 0.23
CHRNA1P02708 AL008707.1-201ENST00000422498 534 ntBASIC16.47■□□□□ 0.23
CHRNA1P02708 TUBB8P8-201ENST00000458717 1058 ntBASIC16.47■□□□□ 0.23
CHRNA1P02708 OARD1-204ENST00000464633 717 ntTSL 2 BASIC16.47■□□□□ 0.23
CHRNA1P02708 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC16.47■□□□□ 0.23
CHRNA1P02708 AC245884.6-201ENST00000515672 1067 ntBASIC16.47■□□□□ 0.23
CHRNA1P02708 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC16.47■□□□□ 0.23
CHRNA1P02708 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC16.47■□□□□ 0.23
CHRNA1P02708 CSH2-206ENST00000560142 749 ntTSL 5 BASIC16.47■□□□□ 0.23
CHRNA1P02708 AC013355.1-201ENST00000562625 723 ntBASIC16.47■□□□□ 0.23
CHRNA1P02708 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CHRNA1P02708 RPS15-202ENST00000585665 467 ntTSL 3 BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms