Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CDKL5O76039 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC17.82■□□□□ 0.44
CDKL5O76039 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CDKL5O76039 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CDKL5O76039 NUS1P3-201ENST00000423502 862 ntBASIC17.82■□□□□ 0.44
CDKL5O76039 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC17.82■□□□□ 0.44
CDKL5O76039 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC17.82■□□□□ 0.44
CDKL5O76039 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC17.82■□□□□ 0.44
CDKL5O76039 SPCS2P1-201ENST00000561636 679 ntBASIC17.82■□□□□ 0.44
CDKL5O76039 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC17.82■□□□□ 0.44
CDKL5O76039 AC120045.2-201ENST00000567334 178 ntBASIC17.82■□□□□ 0.44
CDKL5O76039 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC17.82■□□□□ 0.44
CDKL5O76039 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC17.82■□□□□ 0.44
CDKL5O76039 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC17.82■□□□□ 0.44
CDKL5O76039 AC007431.3-201ENST00000623221 587 ntBASIC17.82■□□□□ 0.44
CDKL5O76039 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC17.82■□□□□ 0.44
CDKL5O76039 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
CDKL5O76039 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC17.82■□□□□ 0.44
CDKL5O76039 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CDKL5O76039 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC17.82■□□□□ 0.44
CDKL5O76039 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CDKL5O76039 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CDKL5O76039 AC023824.1-201ENST00000562945 2975 ntBASIC17.82■□□□□ 0.44
CDKL5O76039 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC17.82■□□□□ 0.44
CDKL5O76039 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
CDKL5O76039 AC007541.1-201ENST00000570282 1469 ntBASIC17.82■□□□□ 0.44
CDKL5O76039 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDKL5O76039 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC17.81■□□□□ 0.44
CDKL5O76039 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC17.81■□□□□ 0.44
CDKL5O76039 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CDKL5O76039 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDKL5O76039 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC17.81■□□□□ 0.44
CDKL5O76039 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC17.81■□□□□ 0.44
CDKL5O76039 LILRP1-201ENST00000444199 1370 ntBASIC17.81■□□□□ 0.44
CDKL5O76039 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDKL5O76039 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDKL5O76039 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC17.81■□□□□ 0.44
CDKL5O76039 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDKL5O76039 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CDKL5O76039 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CDKL5O76039 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDKL5O76039 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDKL5O76039 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDKL5O76039 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDKL5O76039 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC17.81■□□□□ 0.44
CDKL5O76039 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC17.81■□□□□ 0.44
CDKL5O76039 AC123567.1-201ENST00000548294 1261 ntBASIC17.81■□□□□ 0.44
CDKL5O76039 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC17.81■□□□□ 0.44
CDKL5O76039 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC17.81■□□□□ 0.44
CDKL5O76039 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC17.81■□□□□ 0.44
CDKL5O76039 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC17.81■□□□□ 0.44
CDKL5O76039 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDKL5O76039 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
CDKL5O76039 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CDKL5O76039 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC17.81■□□□□ 0.44
CDKL5O76039 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDKL5O76039 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDKL5O76039 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC17.81■□□□□ 0.44
CDKL5O76039 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC17.8■□□□□ 0.44
CDKL5O76039 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDKL5O76039 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDKL5O76039 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CDKL5O76039 SLC9A7P1-202ENST00000556476 2239 ntBASIC17.8■□□□□ 0.44
CDKL5O76039 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDKL5O76039 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CDKL5O76039 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC17.8■□□□□ 0.44
CDKL5O76039 AL158070.2-201ENST00000623713 1621 ntBASIC17.8■□□□□ 0.44
CDKL5O76039 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDKL5O76039 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CDKL5O76039 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
CDKL5O76039 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDKL5O76039 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDKL5O76039 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
CDKL5O76039 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC17.8■□□□□ 0.44
CDKL5O76039 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDKL5O76039 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDKL5O76039 AL359258.3-201ENST00000622910 2331 ntBASIC17.8■□□□□ 0.44
CDKL5O76039 TEX30-203ENST00000376022 828 ntTSL 2 BASIC17.8■□□□□ 0.44
CDKL5O76039 C1QBPP1-201ENST00000400117 770 ntBASIC17.8■□□□□ 0.44
CDKL5O76039 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC17.8■□□□□ 0.44
CDKL5O76039 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC17.8■□□□□ 0.44
CDKL5O76039 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
CDKL5O76039 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC17.8■□□□□ 0.44
CDKL5O76039 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC17.8■□□□□ 0.44
CDKL5O76039 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CDKL5O76039 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC17.8■□□□□ 0.44
CDKL5O76039 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC17.8■□□□□ 0.44
CDKL5O76039 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC17.8■□□□□ 0.44
CDKL5O76039 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC17.8■□□□□ 0.44
CDKL5O76039 LINC02560-201ENST00000596379 459 ntBASIC17.8■□□□□ 0.44
CDKL5O76039 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC17.8■□□□□ 0.44
CDKL5O76039 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC17.8■□□□□ 0.44
CDKL5O76039 MIR8072-201ENST00000614241 80 ntBASIC17.8■□□□□ 0.44
CDKL5O76039 AC008761.3-201ENST00000624803 892 ntBASIC17.8■□□□□ 0.44
CDKL5O76039 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC17.8■□□□□ 0.44
CDKL5O76039 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDKL5O76039 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
CDKL5O76039 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDKL5O76039 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDKL5O76039 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms