Protein–RNA interactions for Protein: P30531

SLC6A1, Sodium- and chloride-dependent GABA transporter 1, humanhuman

Predictions only

Length 599 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A1P30531 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SLC6A1P30531 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SLC6A1P30531 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SLC6A1P30531 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC19.89■□□□□ 0.77
SLC6A1P30531 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
SLC6A1P30531 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SLC6A1P30531 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SLC6A1P30531 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC19.89■□□□□ 0.77
SLC6A1P30531 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
SLC6A1P30531 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
SLC6A1P30531 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SLC6A1P30531 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC19.88■□□□□ 0.77
SLC6A1P30531 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC19.88■□□□□ 0.77
SLC6A1P30531 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC19.88■□□□□ 0.77
SLC6A1P30531 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SLC6A1P30531 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC19.88■□□□□ 0.77
SLC6A1P30531 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SLC6A1P30531 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SLC6A1P30531 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SLC6A1P30531 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SLC6A1P30531 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC19.88■□□□□ 0.77
SLC6A1P30531 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SLC6A1P30531 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SLC6A1P30531 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SLC6A1P30531 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SLC6A1P30531 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SLC6A1P30531 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SLC6A1P30531 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SLC6A1P30531 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
SLC6A1P30531 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SLC6A1P30531 LSR-205ENST00000427250 1606 ntTSL 2 BASIC19.87■□□□□ 0.77
SLC6A1P30531 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SLC6A1P30531 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SLC6A1P30531 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
SLC6A1P30531 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC19.87■□□□□ 0.77
SLC6A1P30531 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
SLC6A1P30531 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SLC6A1P30531 GUSBP5-202ENST00000510805 1989 ntBASIC19.87■□□□□ 0.77
SLC6A1P30531 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SLC6A1P30531 RPS2-210ENST00000530225 765 ntTSL 2 BASIC19.87■□□□□ 0.77
SLC6A1P30531 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SLC6A1P30531 MIR6089-201ENST00000616698 64 ntBASIC19.87■□□□□ 0.77
SLC6A1P30531 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SLC6A1P30531 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SLC6A1P30531 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SLC6A1P30531 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC19.87■□□□□ 0.77
SLC6A1P30531 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
SLC6A1P30531 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SLC6A1P30531 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC19.86■□□□□ 0.77
SLC6A1P30531 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC19.86■□□□□ 0.77
SLC6A1P30531 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SLC6A1P30531 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SLC6A1P30531 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SLC6A1P30531 LSR-203ENST00000360798 1963 ntTSL 2 BASIC19.85■□□□□ 0.77
SLC6A1P30531 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
SLC6A1P30531 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SLC6A1P30531 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SLC6A1P30531 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SLC6A1P30531 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC19.85■□□□□ 0.77
SLC6A1P30531 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
SLC6A1P30531 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SLC6A1P30531 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SLC6A1P30531 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SLC6A1P30531 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
SLC6A1P30531 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SLC6A1P30531 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
SLC6A1P30531 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SLC6A1P30531 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC19.84■□□□□ 0.77
SLC6A1P30531 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SLC6A1P30531 TERT-206ENST00000508104 2486 ntTSL 5 BASIC19.84■□□□□ 0.77
SLC6A1P30531 ECEL1P1-201ENST00000373592 1742 ntBASIC19.84■□□□□ 0.77
SLC6A1P30531 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SLC6A1P30531 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SLC6A1P30531 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
SLC6A1P30531 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SLC6A1P30531 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
SLC6A1P30531 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SLC6A1P30531 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SLC6A1P30531 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SLC6A1P30531 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC19.83■□□□□ 0.77
SLC6A1P30531 HSD17B1P1-201ENST00000590052 955 ntBASIC19.83■□□□□ 0.77
SLC6A1P30531 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
SLC6A1P30531 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
SLC6A1P30531 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SLC6A1P30531 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
SLC6A1P30531 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SLC6A1P30531 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SLC6A1P30531 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SLC6A1P30531 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
SLC6A1P30531 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
SLC6A1P30531 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC19.82■□□□□ 0.76
SLC6A1P30531 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC19.82■□□□□ 0.76
SLC6A1P30531 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC19.82■□□□□ 0.76
SLC6A1P30531 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SLC6A1P30531 MED17-221ENST00000639724 2317 ntTSL 5 BASIC19.82■□□□□ 0.76
SLC6A1P30531 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SLC6A1P30531 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
SLC6A1P30531 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SLC6A1P30531 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
SLC6A1P30531 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC19.81■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms