Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC24.98■■□□□ 1.59
SMIM28A0A1B0GU29 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
SMIM28A0A1B0GU29 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
SMIM28A0A1B0GU29 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
SMIM28A0A1B0GU29 TFPT-201ENST00000391757 774 ntTSL 5 BASIC24.97■■□□□ 1.59
SMIM28A0A1B0GU29 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC24.97■■□□□ 1.59
SMIM28A0A1B0GU29 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC24.97■■□□□ 1.59
SMIM28A0A1B0GU29 AL356740.2-201ENST00000601559 647 ntBASIC24.97■■□□□ 1.59
SMIM28A0A1B0GU29 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC24.97■■□□□ 1.59
SMIM28A0A1B0GU29 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC24.97■■□□□ 1.59
SMIM28A0A1B0GU29 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC24.97■■□□□ 1.59
SMIM28A0A1B0GU29 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC24.96■■□□□ 1.59
SMIM28A0A1B0GU29 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC24.96■■□□□ 1.59
SMIM28A0A1B0GU29 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
SMIM28A0A1B0GU29 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
SMIM28A0A1B0GU29 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
SMIM28A0A1B0GU29 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC24.95■■□□□ 1.59
SMIM28A0A1B0GU29 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC24.95■■□□□ 1.58
SMIM28A0A1B0GU29 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC24.95■■□□□ 1.58
SMIM28A0A1B0GU29 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC24.95■■□□□ 1.58
SMIM28A0A1B0GU29 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC24.95■■□□□ 1.58
SMIM28A0A1B0GU29 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
SMIM28A0A1B0GU29 AC131281.2-201ENST00000520478 145 ntBASIC24.95■■□□□ 1.58
SMIM28A0A1B0GU29 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC24.95■■□□□ 1.58
SMIM28A0A1B0GU29 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
SMIM28A0A1B0GU29 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
SMIM28A0A1B0GU29 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC24.94■■□□□ 1.58
SMIM28A0A1B0GU29 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
SMIM28A0A1B0GU29 MTURN-203ENST00000409688 843 ntTSL 2 BASIC24.94■■□□□ 1.58
SMIM28A0A1B0GU29 PEMT-206ENST00000435340 960 ntTSL 5 BASIC24.94■■□□□ 1.58
SMIM28A0A1B0GU29 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC24.94■■□□□ 1.58
SMIM28A0A1B0GU29 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC24.94■■□□□ 1.58
SMIM28A0A1B0GU29 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
SMIM28A0A1B0GU29 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
SMIM28A0A1B0GU29 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC24.94■■□□□ 1.58
SMIM28A0A1B0GU29 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC24.94■■□□□ 1.58
SMIM28A0A1B0GU29 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC24.94■■□□□ 1.58
SMIM28A0A1B0GU29 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
SMIM28A0A1B0GU29 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
SMIM28A0A1B0GU29 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC24.93■■□□□ 1.58
SMIM28A0A1B0GU29 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
SMIM28A0A1B0GU29 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
SMIM28A0A1B0GU29 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
SMIM28A0A1B0GU29 AK3-203ENST00000447596 705 ntTSL 2 BASIC24.93■■□□□ 1.58
SMIM28A0A1B0GU29 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC24.93■■□□□ 1.58
SMIM28A0A1B0GU29 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
SMIM28A0A1B0GU29 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC24.93■■□□□ 1.58
SMIM28A0A1B0GU29 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
SMIM28A0A1B0GU29 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC24.92■■□□□ 1.58
SMIM28A0A1B0GU29 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC24.92■■□□□ 1.58
SMIM28A0A1B0GU29 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC24.92■■□□□ 1.58
SMIM28A0A1B0GU29 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC24.92■■□□□ 1.58
SMIM28A0A1B0GU29 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC24.92■■□□□ 1.58
SMIM28A0A1B0GU29 HLA-L-211ENST00000482052 1765 ntBASIC24.92■■□□□ 1.58
SMIM28A0A1B0GU29 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC24.92■■□□□ 1.58
SMIM28A0A1B0GU29 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
SMIM28A0A1B0GU29 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC24.92■■□□□ 1.58
SMIM28A0A1B0GU29 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC24.91■■□□□ 1.58
SMIM28A0A1B0GU29 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
SMIM28A0A1B0GU29 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
SMIM28A0A1B0GU29 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
SMIM28A0A1B0GU29 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC24.91■■□□□ 1.58
SMIM28A0A1B0GU29 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC24.91■■□□□ 1.58
SMIM28A0A1B0GU29 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
SMIM28A0A1B0GU29 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC24.91■■□□□ 1.58
SMIM28A0A1B0GU29 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
SMIM28A0A1B0GU29 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
SMIM28A0A1B0GU29 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
SMIM28A0A1B0GU29 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
SMIM28A0A1B0GU29 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
SMIM28A0A1B0GU29 STK32C-205ENST00000456004 607 ntTSL 2 BASIC24.9■■□□□ 1.58
SMIM28A0A1B0GU29 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
SMIM28A0A1B0GU29 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC24.9■■□□□ 1.58
SMIM28A0A1B0GU29 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC24.89■■□□□ 1.58
SMIM28A0A1B0GU29 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
SMIM28A0A1B0GU29 SHF-207ENST00000560540 2062 ntTSL 5 BASIC24.89■■□□□ 1.58
SMIM28A0A1B0GU29 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC24.89■■□□□ 1.58
SMIM28A0A1B0GU29 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC24.89■■□□□ 1.58
SMIM28A0A1B0GU29 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
SMIM28A0A1B0GU29 QDPR-206ENST00000508623 601 ntTSL 3 BASIC24.89■■□□□ 1.58
SMIM28A0A1B0GU29 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
SMIM28A0A1B0GU29 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC24.89■■□□□ 1.58
SMIM28A0A1B0GU29 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
SMIM28A0A1B0GU29 AL022069.1-201ENST00000568025 1636 ntBASIC24.89■■□□□ 1.57
SMIM28A0A1B0GU29 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC24.89■■□□□ 1.57
SMIM28A0A1B0GU29 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC24.88■■□□□ 1.57
SMIM28A0A1B0GU29 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
SMIM28A0A1B0GU29 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
SMIM28A0A1B0GU29 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
SMIM28A0A1B0GU29 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC24.88■■□□□ 1.57
SMIM28A0A1B0GU29 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC24.88■■□□□ 1.57
SMIM28A0A1B0GU29 RASSF1-AS1-201ENST00000629828 790 ntBASIC24.88■■□□□ 1.57
SMIM28A0A1B0GU29 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
SMIM28A0A1B0GU29 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
SMIM28A0A1B0GU29 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
SMIM28A0A1B0GU29 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC24.87■■□□□ 1.57
SMIM28A0A1B0GU29 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC24.87■■□□□ 1.57
SMIM28A0A1B0GU29 AL512631.2-201ENST00000604634 923 ntBASIC24.87■■□□□ 1.57
SMIM28A0A1B0GU29 MIR4466-201ENST00000606121 54 ntBASIC24.87■■□□□ 1.57
SMIM28A0A1B0GU29 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC24.87■■□□□ 1.57
Retrieved 100 of 98,524 protein–RNA pairs in 12.4 ms