Protein–RNA interactions for Protein: A0A0B4J263

TRAV39, T-cell receptor alpha variable 39 (Fragment), humanhuman

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV39A0A0B4J263 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRAV39A0A0B4J263 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TRAV39A0A0B4J263 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRAV39A0A0B4J263 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TRAV39A0A0B4J263 AC090877.2-201ENST00000558441 1738 ntBASIC19.31■□□□□ 0.68
TRAV39A0A0B4J263 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC19.3■□□□□ 0.68
TRAV39A0A0B4J263 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRAV39A0A0B4J263 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRAV39A0A0B4J263 AL592295.1-201ENST00000400984 884 ntBASIC19.3■□□□□ 0.68
TRAV39A0A0B4J263 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC19.3■□□□□ 0.68
TRAV39A0A0B4J263 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC19.3■□□□□ 0.68
TRAV39A0A0B4J263 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TRAV39A0A0B4J263 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRAV39A0A0B4J263 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRAV39A0A0B4J263 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRAV39A0A0B4J263 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
TRAV39A0A0B4J263 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRAV39A0A0B4J263 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TRAV39A0A0B4J263 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRAV39A0A0B4J263 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRAV39A0A0B4J263 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRAV39A0A0B4J263 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC19.29■□□□□ 0.68
TRAV39A0A0B4J263 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC19.29■□□□□ 0.68
TRAV39A0A0B4J263 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRAV39A0A0B4J263 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC19.28■□□□□ 0.68
TRAV39A0A0B4J263 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC19.28■□□□□ 0.68
TRAV39A0A0B4J263 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC19.28■□□□□ 0.68
TRAV39A0A0B4J263 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRAV39A0A0B4J263 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TRAV39A0A0B4J263 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
TRAV39A0A0B4J263 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC19.28■□□□□ 0.68
TRAV39A0A0B4J263 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRAV39A0A0B4J263 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC19.28■□□□□ 0.68
TRAV39A0A0B4J263 AC139795.1-202ENST00000500444 432 ntBASIC19.28■□□□□ 0.68
TRAV39A0A0B4J263 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC19.28■□□□□ 0.68
TRAV39A0A0B4J263 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
TRAV39A0A0B4J263 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRAV39A0A0B4J263 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
TRAV39A0A0B4J263 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRAV39A0A0B4J263 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRAV39A0A0B4J263 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TRAV39A0A0B4J263 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRAV39A0A0B4J263 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC19.27■□□□□ 0.68
TRAV39A0A0B4J263 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRAV39A0A0B4J263 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRAV39A0A0B4J263 AC004987.1-201ENST00000428627 508 ntBASIC19.27■□□□□ 0.68
TRAV39A0A0B4J263 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TRAV39A0A0B4J263 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.67
TRAV39A0A0B4J263 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC19.27■□□□□ 0.67
TRAV39A0A0B4J263 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TRAV39A0A0B4J263 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
TRAV39A0A0B4J263 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRAV39A0A0B4J263 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TRAV39A0A0B4J263 BHLHE23-202ENST00000612929 1109 ntBASIC19.26■□□□□ 0.67
TRAV39A0A0B4J263 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TRAV39A0A0B4J263 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
TRAV39A0A0B4J263 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRAV39A0A0B4J263 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRAV39A0A0B4J263 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRAV39A0A0B4J263 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
TRAV39A0A0B4J263 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
TRAV39A0A0B4J263 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC19.25■□□□□ 0.67
TRAV39A0A0B4J263 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRAV39A0A0B4J263 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
TRAV39A0A0B4J263 ATP5G2P3-201ENST00000429083 425 ntBASIC19.25■□□□□ 0.67
TRAV39A0A0B4J263 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRAV39A0A0B4J263 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TRAV39A0A0B4J263 HYI-210ENST00000486909 905 ntTSL 5 BASIC19.25■□□□□ 0.67
TRAV39A0A0B4J263 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC19.25■□□□□ 0.67
TRAV39A0A0B4J263 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRAV39A0A0B4J263 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRAV39A0A0B4J263 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
TRAV39A0A0B4J263 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRAV39A0A0B4J263 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC19.25■□□□□ 0.67
TRAV39A0A0B4J263 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRAV39A0A0B4J263 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TRAV39A0A0B4J263 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRAV39A0A0B4J263 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRAV39A0A0B4J263 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TRAV39A0A0B4J263 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRAV39A0A0B4J263 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRAV39A0A0B4J263 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TRAV39A0A0B4J263 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
TRAV39A0A0B4J263 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
TRAV39A0A0B4J263 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRAV39A0A0B4J263 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRAV39A0A0B4J263 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC19.24■□□□□ 0.67
TRAV39A0A0B4J263 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRAV39A0A0B4J263 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TRAV39A0A0B4J263 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRAV39A0A0B4J263 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC19.23■□□□□ 0.67
TRAV39A0A0B4J263 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
TRAV39A0A0B4J263 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRAV39A0A0B4J263 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC19.23■□□□□ 0.67
TRAV39A0A0B4J263 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC19.23■□□□□ 0.67
TRAV39A0A0B4J263 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRAV39A0A0B4J263 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TRAV39A0A0B4J263 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRAV39A0A0B4J263 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRAV39A0A0B4J263 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms