Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PKNOX1P55347 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PKNOX1P55347 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
PKNOX1P55347 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
PKNOX1P55347 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PKNOX1P55347 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC15.12■□□□□ 0.01
PKNOX1P55347 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PKNOX1P55347 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PKNOX1P55347 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PKNOX1P55347 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
PKNOX1P55347 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PKNOX1P55347 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PKNOX1P55347 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PKNOX1P55347 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
PKNOX1P55347 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PKNOX1P55347 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
PKNOX1P55347 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PKNOX1P55347 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC15.12■□□□□ 0.01
PKNOX1P55347 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PKNOX1P55347 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC15.12■□□□□ 0.01
PKNOX1P55347 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC15.12■□□□□ 0.01
PKNOX1P55347 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC15.12■□□□□ 0.01
PKNOX1P55347 AC112482.1-201ENST00000492080 688 ntBASIC15.12■□□□□ 0.01
PKNOX1P55347 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC15.12■□□□□ 0.01
PKNOX1P55347 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC15.12■□□□□ 0.01
PKNOX1P55347 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
PKNOX1P55347 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
PKNOX1P55347 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC15.12■□□□□ 0.01
PKNOX1P55347 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PKNOX1P55347 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC15.12■□□□□ 0.01
PKNOX1P55347 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC15.12■□□□□ 0.01
PKNOX1P55347 AL589739.1-201ENST00000607720 493 ntBASIC15.12■□□□□ 0.01
PKNOX1P55347 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC15.12■□□□□ 0.01
PKNOX1P55347 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
PKNOX1P55347 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
PKNOX1P55347 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PKNOX1P55347 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PKNOX1P55347 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
PKNOX1P55347 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PKNOX1P55347 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PKNOX1P55347 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PKNOX1P55347 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC15.12■□□□□ 0.01
PKNOX1P55347 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PKNOX1P55347 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC15.12■□□□□ 0.01
PKNOX1P55347 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
PKNOX1P55347 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
PKNOX1P55347 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC15.12■□□□□ 0.01
PKNOX1P55347 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PKNOX1P55347 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PKNOX1P55347 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PKNOX1P55347 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC15.12■□□□□ 0.01
PKNOX1P55347 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
PKNOX1P55347 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PKNOX1P55347 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC15.11■□□□□ 0.01
PKNOX1P55347 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
PKNOX1P55347 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC15.11■□□□□ 0.01
PKNOX1P55347 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PKNOX1P55347 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC15.11■□□□□ 0.01
PKNOX1P55347 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PKNOX1P55347 CICP11-201ENST00000434745 2827 ntBASIC15.11■□□□□ 0.01
PKNOX1P55347 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC15.11■□□□□ 0.01
PKNOX1P55347 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
PKNOX1P55347 AL133267.1-201ENST00000398220 340 ntBASIC15.11■□□□□ 0.01
PKNOX1P55347 AC074338.1-201ENST00000416825 156 ntBASIC15.11■□□□□ 0.01
PKNOX1P55347 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC15.11■□□□□ 0.01
PKNOX1P55347 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC15.11■□□□□ 0.01
PKNOX1P55347 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC15.11■□□□□ 0.01
PKNOX1P55347 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC15.11■□□□□ 0.01
PKNOX1P55347 AL512356.2-201ENST00000546955 174 ntBASIC15.11■□□□□ 0.01
PKNOX1P55347 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC15.11■□□□□ 0.01
PKNOX1P55347 GRAMD4P3-201ENST00000621665 1669 ntBASIC15.11■□□□□ 0.01
PKNOX1P55347 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC15.11■□□□□ 0.01
PKNOX1P55347 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PKNOX1P55347 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PKNOX1P55347 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
PKNOX1P55347 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PKNOX1P55347 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PKNOX1P55347 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PKNOX1P55347 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
PKNOX1P55347 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC15.11■□□□□ 0.01
PKNOX1P55347 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
PKNOX1P55347 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
PKNOX1P55347 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
PKNOX1P55347 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC15.11■□□□□ 0.01
PKNOX1P55347 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PKNOX1P55347 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
PKNOX1P55347 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC15.1■□□□□ 0.01
PKNOX1P55347 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
PKNOX1P55347 AMT-204ENST00000427987 1646 ntTSL 5 BASIC15.1■□□□□ 0.01
PKNOX1P55347 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PKNOX1P55347 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PKNOX1P55347 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
PKNOX1P55347 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC15.1■□□□□ 0.01
PKNOX1P55347 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
PKNOX1P55347 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC15.1■□□□□ 0.01
PKNOX1P55347 TK1-203ENST00000588734 1681 ntTSL 2 BASIC15.1■□□□□ 0.01
PKNOX1P55347 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
PKNOX1P55347 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC15.1■□□□□ 0.01
PKNOX1P55347 MFF-204ENST00000353339 2186 ntTSL 5 BASIC15.1■□□□□ 0.01
PKNOX1P55347 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms