Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA1P55317 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA1P55317 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA1P55317 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA1P55317 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC14.86□□□□□ -0.03
FOXA1P55317 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
FOXA1P55317 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC14.86□□□□□ -0.03
FOXA1P55317 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA1P55317 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA1P55317 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA1P55317 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA1P55317 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
FOXA1P55317 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA1P55317 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA1P55317 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC14.85□□□□□ -0.03
FOXA1P55317 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA1P55317 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA1P55317 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA1P55317 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA1P55317 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA1P55317 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
FOXA1P55317 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA1P55317 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
FOXA1P55317 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA1P55317 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC14.85□□□□□ -0.03
FOXA1P55317 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC14.85□□□□□ -0.03
FOXA1P55317 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC14.85□□□□□ -0.03
FOXA1P55317 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
FOXA1P55317 SAMD11P1-201ENST00000571429 661 ntBASIC14.85□□□□□ -0.03
FOXA1P55317 TEX48-202ENST00000612244 662 ntTSL 3 BASIC14.85□□□□□ -0.03
FOXA1P55317 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC14.85□□□□□ -0.03
FOXA1P55317 AC004461.2-201ENST00000629517 803 ntBASIC14.85□□□□□ -0.03
FOXA1P55317 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA1P55317 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA1P55317 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA1P55317 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA1P55317 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
FOXA1P55317 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA1P55317 AC087499.5-201ENST00000452760 1342 ntBASIC14.85□□□□□ -0.03
FOXA1P55317 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA1P55317 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC14.85□□□□□ -0.03
FOXA1P55317 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA1P55317 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
FOXA1P55317 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
FOXA1P55317 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA1P55317 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC14.85□□□□□ -0.03
FOXA1P55317 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA1P55317 LILRP1-201ENST00000444199 1370 ntBASIC14.85□□□□□ -0.03
FOXA1P55317 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA1P55317 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
FOXA1P55317 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC14.84□□□□□ -0.03
FOXA1P55317 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC14.84□□□□□ -0.03
FOXA1P55317 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA1P55317 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA1P55317 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA1P55317 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC14.84□□□□□ -0.03
FOXA1P55317 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC14.84□□□□□ -0.03
FOXA1P55317 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA1P55317 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA1P55317 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA1P55317 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA1P55317 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA1P55317 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA1P55317 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA1P55317 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC14.84□□□□□ -0.03
FOXA1P55317 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA1P55317 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
FOXA1P55317 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
FOXA1P55317 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA1P55317 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA1P55317 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA1P55317 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC14.84□□□□□ -0.03
FOXA1P55317 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA1P55317 BAD-202ENST00000394531 631 ntTSL 3 BASIC14.84□□□□□ -0.03
FOXA1P55317 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC14.84□□□□□ -0.03
FOXA1P55317 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA1P55317 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC14.84□□□□□ -0.03
FOXA1P55317 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
FOXA1P55317 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
FOXA1P55317 RAB35-202ENST00000534951 939 ntTSL 2 BASIC14.84□□□□□ -0.03
FOXA1P55317 BAD-207ENST00000544785 525 ntTSL 3 BASIC14.84□□□□□ -0.03
FOXA1P55317 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC14.84□□□□□ -0.03
FOXA1P55317 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
FOXA1P55317 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC14.84□□□□□ -0.03
FOXA1P55317 AC140878.1-201ENST00000565277 250 ntBASIC14.84□□□□□ -0.03
FOXA1P55317 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC14.84□□□□□ -0.03
FOXA1P55317 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC14.84□□□□□ -0.03
FOXA1P55317 GPX4-206ENST00000588919 803 ntTSL 2 BASIC14.84□□□□□ -0.03
FOXA1P55317 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC14.84□□□□□ -0.03
FOXA1P55317 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA1P55317 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA1P55317 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC14.84□□□□□ -0.03
FOXA1P55317 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
FOXA1P55317 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA1P55317 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA1P55317 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC14.84□□□□□ -0.03
FOXA1P55317 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA1P55317 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
FOXA1P55317 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC14.84□□□□□ -0.03
FOXA1P55317 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC14.83□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 56.8 ms