Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX3-1Q99801 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
NKX3-1Q99801 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
NKX3-1Q99801 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
NKX3-1Q99801 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC13.5□□□□□ -0.25
NKX3-1Q99801 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX3-1Q99801 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC13.5□□□□□ -0.25
NKX3-1Q99801 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX3-1Q99801 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
NKX3-1Q99801 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
NKX3-1Q99801 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC13.49□□□□□ -0.25
NKX3-1Q99801 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
NKX3-1Q99801 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC13.49□□□□□ -0.25
NKX3-1Q99801 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC13.49□□□□□ -0.25
NKX3-1Q99801 REXO1L2P-201ENST00000425429 2069 ntBASIC13.49□□□□□ -0.25
NKX3-1Q99801 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
NKX3-1Q99801 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
NKX3-1Q99801 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
NKX3-1Q99801 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
NKX3-1Q99801 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
NKX3-1Q99801 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
NKX3-1Q99801 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC13.49□□□□□ -0.25
NKX3-1Q99801 AC138969.2-201ENST00000532739 9932 ntBASIC13.49□□□□□ -0.25
NKX3-1Q99801 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
NKX3-1Q99801 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC13.49□□□□□ -0.25
NKX3-1Q99801 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
NKX3-1Q99801 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
NKX3-1Q99801 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC13.49□□□□□ -0.25
NKX3-1Q99801 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
NKX3-1Q99801 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
NKX3-1Q99801 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
NKX3-1Q99801 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
NKX3-1Q99801 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
NKX3-1Q99801 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC13.49□□□□□ -0.25
NKX3-1Q99801 MKNK2P1-201ENST00000437526 628 ntBASIC13.49□□□□□ -0.25
NKX3-1Q99801 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC13.49□□□□□ -0.25
NKX3-1Q99801 EEF1DP4-201ENST00000446006 880 ntBASIC13.49□□□□□ -0.25
NKX3-1Q99801 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
NKX3-1Q99801 RN7SL589P-201ENST00000481268 310 ntBASIC13.49□□□□□ -0.25
NKX3-1Q99801 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
NKX3-1Q99801 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
NKX3-1Q99801 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC13.49□□□□□ -0.25
NKX3-1Q99801 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC13.49□□□□□ -0.25
NKX3-1Q99801 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC13.49□□□□□ -0.25
NKX3-1Q99801 MAX-210ENST00000555419 765 ntTSL 5 BASIC13.49□□□□□ -0.25
NKX3-1Q99801 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
NKX3-1Q99801 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
NKX3-1Q99801 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
NKX3-1Q99801 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC13.49□□□□□ -0.25
NKX3-1Q99801 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
NKX3-1Q99801 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
NKX3-1Q99801 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
NKX3-1Q99801 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
NKX3-1Q99801 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
NKX3-1Q99801 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC13.49□□□□□ -0.25
NKX3-1Q99801 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
NKX3-1Q99801 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
NKX3-1Q99801 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC13.49□□□□□ -0.25
NKX3-1Q99801 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC13.49□□□□□ -0.25
NKX3-1Q99801 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
NKX3-1Q99801 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC13.49□□□□□ -0.25
NKX3-1Q99801 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC13.49□□□□□ -0.25
NKX3-1Q99801 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
NKX3-1Q99801 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
NKX3-1Q99801 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC13.49□□□□□ -0.25
NKX3-1Q99801 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
NKX3-1Q99801 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
NKX3-1Q99801 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
NKX3-1Q99801 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC13.48□□□□□ -0.25
NKX3-1Q99801 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
NKX3-1Q99801 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC13.48□□□□□ -0.25
NKX3-1Q99801 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
NKX3-1Q99801 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
NKX3-1Q99801 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
NKX3-1Q99801 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
NKX3-1Q99801 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
NKX3-1Q99801 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
NKX3-1Q99801 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
NKX3-1Q99801 NME2-201ENST00000393183 568 ntTSL 2 BASIC13.48□□□□□ -0.25
NKX3-1Q99801 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
NKX3-1Q99801 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
NKX3-1Q99801 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC13.48□□□□□ -0.25
NKX3-1Q99801 URGCP-206ENST00000446958 365 ntTSL 2 BASIC13.48□□□□□ -0.25
NKX3-1Q99801 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC13.48□□□□□ -0.25
NKX3-1Q99801 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
NKX3-1Q99801 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC13.48□□□□□ -0.25
NKX3-1Q99801 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC13.48□□□□□ -0.25
NKX3-1Q99801 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC13.48□□□□□ -0.25
NKX3-1Q99801 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
NKX3-1Q99801 BANF1P1-201ENST00000553684 263 ntBASIC13.48□□□□□ -0.25
NKX3-1Q99801 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC13.48□□□□□ -0.25
NKX3-1Q99801 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC13.48□□□□□ -0.25
NKX3-1Q99801 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC13.48□□□□□ -0.25
NKX3-1Q99801 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC13.48□□□□□ -0.25
NKX3-1Q99801 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
NKX3-1Q99801 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
NKX3-1Q99801 C8orf49-201ENST00000525043 1968 ntBASIC13.48□□□□□ -0.25
NKX3-1Q99801 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
NKX3-1Q99801 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
NKX3-1Q99801 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms