Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC10.42□□□□□ -0.74
CSMD3Q7Z407 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
CSMD3Q7Z407 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CSMD3Q7Z407 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC10.42□□□□□ -0.74
CSMD3Q7Z407 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC10.42□□□□□ -0.74
CSMD3Q7Z407 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC10.42□□□□□ -0.74
CSMD3Q7Z407 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
CSMD3Q7Z407 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CSMD3Q7Z407 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC10.42□□□□□ -0.74
CSMD3Q7Z407 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CSMD3Q7Z407 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC10.42□□□□□ -0.74
CSMD3Q7Z407 AC026434.2-201ENST00000506094 1078 ntBASIC10.42□□□□□ -0.74
CSMD3Q7Z407 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC10.42□□□□□ -0.74
CSMD3Q7Z407 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC10.42□□□□□ -0.74
CSMD3Q7Z407 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC10.42□□□□□ -0.74
CSMD3Q7Z407 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
CSMD3Q7Z407 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CSMD3Q7Z407 AC112504.1-201ENST00000623415 1841 ntBASIC10.42□□□□□ -0.74
CSMD3Q7Z407 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC10.42□□□□□ -0.74
CSMD3Q7Z407 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CSMD3Q7Z407 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC10.42□□□□□ -0.74
CSMD3Q7Z407 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC10.42□□□□□ -0.74
CSMD3Q7Z407 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC10.42□□□□□ -0.74
CSMD3Q7Z407 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC10.42□□□□□ -0.74
CSMD3Q7Z407 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC10.42□□□□□ -0.74
CSMD3Q7Z407 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
CSMD3Q7Z407 TMEM176B-201ENST00000326442 1129 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CSMD3Q7Z407 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
CSMD3Q7Z407 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC10.42□□□□□ -0.74
CSMD3Q7Z407 AF111169.2-201ENST00000553758 721 ntTSL 3 BASIC10.42□□□□□ -0.74
CSMD3Q7Z407 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
CSMD3Q7Z407 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC10.42□□□□□ -0.74
CSMD3Q7Z407 AC011481.2-201ENST00000585408 426 ntTSL 3 BASIC10.42□□□□□ -0.74
CSMD3Q7Z407 SLC27A5-204ENST00000594786 643 ntTSL 2 BASIC10.42□□□□□ -0.74
CSMD3Q7Z407 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC10.42□□□□□ -0.74
CSMD3Q7Z407 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CSMD3Q7Z407 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC10.42□□□□□ -0.74
CSMD3Q7Z407 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC10.42□□□□□ -0.74
CSMD3Q7Z407 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CSMD3Q7Z407 DBET-201ENST00000630918 3363 ntBASIC10.42□□□□□ -0.74
CSMD3Q7Z407 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC10.42□□□□□ -0.74
CSMD3Q7Z407 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC10.42□□□□□ -0.74
CSMD3Q7Z407 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC10.42□□□□□ -0.74
CSMD3Q7Z407 NAT9-220ENST00000582870 896 ntTSL 5 BASIC10.42□□□□□ -0.74
CSMD3Q7Z407 AC103810.10-201ENST00000606504 343 ntBASIC10.42□□□□□ -0.74
CSMD3Q7Z407 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC10.42□□□□□ -0.74
CSMD3Q7Z407 HTR4-213ENST00000631296 1224 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CSMD3Q7Z407 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CSMD3Q7Z407 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
CSMD3Q7Z407 AC090616.6-203ENST00000579186 1945 ntBASIC10.41□□□□□ -0.74
CSMD3Q7Z407 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
CSMD3Q7Z407 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
CSMD3Q7Z407 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC10.41□□□□□ -0.74
CSMD3Q7Z407 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
CSMD3Q7Z407 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
CSMD3Q7Z407 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC10.41□□□□□ -0.74
CSMD3Q7Z407 FAM90A2P-201ENST00000511144 1395 ntBASIC10.41□□□□□ -0.74
CSMD3Q7Z407 FAM90A25P-201ENST00000528404 1395 ntBASIC10.41□□□□□ -0.74
CSMD3Q7Z407 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC10.41□□□□□ -0.74
CSMD3Q7Z407 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC10.41□□□□□ -0.74
CSMD3Q7Z407 AC092850.2-201ENST00000623821 2697 ntBASIC10.41□□□□□ -0.74
CSMD3Q7Z407 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC10.41□□□□□ -0.74
CSMD3Q7Z407 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC10.41□□□□□ -0.74
CSMD3Q7Z407 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC10.41□□□□□ -0.74
CSMD3Q7Z407 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
CSMD3Q7Z407 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
CSMD3Q7Z407 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC10.41□□□□□ -0.74
CSMD3Q7Z407 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC10.41□□□□□ -0.74
CSMD3Q7Z407 POLD4-208ENST00000532830 904 ntTSL 3 BASIC10.41□□□□□ -0.74
CSMD3Q7Z407 DNM1P51-201ENST00000558149 522 ntBASIC10.41□□□□□ -0.74
CSMD3Q7Z407 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC10.41□□□□□ -0.74
CSMD3Q7Z407 AC093567.1-201ENST00000590649 877 ntTSL 3 BASIC10.41□□□□□ -0.74
CSMD3Q7Z407 AC138466.4-201ENST00000623965 852 ntBASIC10.41□□□□□ -0.74
CSMD3Q7Z407 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC10.41□□□□□ -0.74
CSMD3Q7Z407 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC10.41□□□□□ -0.74
CSMD3Q7Z407 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC10.41□□□□□ -0.74
CSMD3Q7Z407 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC10.41□□□□□ -0.74
CSMD3Q7Z407 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
CSMD3Q7Z407 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
CSMD3Q7Z407 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC10.41□□□□□ -0.74
CSMD3Q7Z407 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
CSMD3Q7Z407 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC10.41□□□□□ -0.74
CSMD3Q7Z407 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
CSMD3Q7Z407 AC069224.1-201ENST00000566372 1715 ntBASIC10.41□□□□□ -0.74
CSMD3Q7Z407 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC10.41□□□□□ -0.74
CSMD3Q7Z407 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC10.41□□□□□ -0.74
CSMD3Q7Z407 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC10.41□□□□□ -0.74
CSMD3Q7Z407 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
CSMD3Q7Z407 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
CSMD3Q7Z407 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
CSMD3Q7Z407 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
CSMD3Q7Z407 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
CSMD3Q7Z407 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC10.41□□□□□ -0.74
CSMD3Q7Z407 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC10.41□□□□□ -0.74
CSMD3Q7Z407 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC10.41□□□□□ -0.74
CSMD3Q7Z407 HIST2H2BA-201ENST00000412169 381 ntBASIC10.41□□□□□ -0.74
CSMD3Q7Z407 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC10.41□□□□□ -0.74
CSMD3Q7Z407 POU5F1P2-201ENST00000521750 823 ntBASIC10.41□□□□□ -0.74
CSMD3Q7Z407 RNF146-211ENST00000609447 607 ntTSL 4 BASIC10.41□□□□□ -0.74
CSMD3Q7Z407 DDX5-235ENST00000630471 473 ntTSL 4 BASIC10.41□□□□□ -0.74
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms