Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
TRIM39Q9HCM9 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRIM39Q9HCM9 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TRIM39Q9HCM9 TEX30-203ENST00000376022 828 ntTSL 2 BASIC15.29■□□□□ 0.04
TRIM39Q9HCM9 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
TRIM39Q9HCM9 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC15.29■□□□□ 0.04
TRIM39Q9HCM9 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC15.29■□□□□ 0.04
TRIM39Q9HCM9 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC15.29■□□□□ 0.04
TRIM39Q9HCM9 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC15.29■□□□□ 0.04
TRIM39Q9HCM9 AC132938.2-201ENST00000579188 680 ntBASIC15.29■□□□□ 0.04
TRIM39Q9HCM9 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC15.29■□□□□ 0.04
TRIM39Q9HCM9 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC15.29■□□□□ 0.04
TRIM39Q9HCM9 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TRIM39Q9HCM9 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC15.29■□□□□ 0.04
TRIM39Q9HCM9 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TRIM39Q9HCM9 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC15.29■□□□□ 0.04
TRIM39Q9HCM9 AL591163.1-201ENST00000641757 987 ntBASIC15.29■□□□□ 0.04
TRIM39Q9HCM9 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRIM39Q9HCM9 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRIM39Q9HCM9 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TRIM39Q9HCM9 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TRIM39Q9HCM9 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC15.29■□□□□ 0.04
TRIM39Q9HCM9 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TRIM39Q9HCM9 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC15.29■□□□□ 0.04
TRIM39Q9HCM9 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
TRIM39Q9HCM9 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TRIM39Q9HCM9 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC15.29■□□□□ 0.04
TRIM39Q9HCM9 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TRIM39Q9HCM9 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM39Q9HCM9 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
TRIM39Q9HCM9 AL138799.1-201ENST00000448213 1675 ntBASIC15.28■□□□□ 0.04
TRIM39Q9HCM9 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM39Q9HCM9 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC15.28■□□□□ 0.04
TRIM39Q9HCM9 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM39Q9HCM9 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM39Q9HCM9 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM39Q9HCM9 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM39Q9HCM9 AC092384.3-202ENST00000564646 2873 ntBASIC15.28■□□□□ 0.04
TRIM39Q9HCM9 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC15.28■□□□□ 0.04
TRIM39Q9HCM9 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM39Q9HCM9 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM39Q9HCM9 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC15.28■□□□□ 0.04
TRIM39Q9HCM9 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM39Q9HCM9 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM39Q9HCM9 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
TRIM39Q9HCM9 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM39Q9HCM9 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM39Q9HCM9 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM39Q9HCM9 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM39Q9HCM9 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM39Q9HCM9 MPV17-208ENST00000405076 603 ntTSL 5 BASIC15.28■□□□□ 0.04
TRIM39Q9HCM9 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC15.28■□□□□ 0.04
TRIM39Q9HCM9 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC15.28■□□□□ 0.04
TRIM39Q9HCM9 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC15.28■□□□□ 0.04
TRIM39Q9HCM9 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC15.28■□□□□ 0.04
TRIM39Q9HCM9 GLI4-203ENST00000517468 963 ntTSL 5 BASIC15.28■□□□□ 0.04
TRIM39Q9HCM9 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC15.28■□□□□ 0.04
TRIM39Q9HCM9 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM39Q9HCM9 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC15.28■□□□□ 0.04
TRIM39Q9HCM9 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
TRIM39Q9HCM9 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
TRIM39Q9HCM9 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC15.28■□□□□ 0.04
TRIM39Q9HCM9 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC15.28■□□□□ 0.04
TRIM39Q9HCM9 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM39Q9HCM9 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM39Q9HCM9 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC15.28■□□□□ 0.04
TRIM39Q9HCM9 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
TRIM39Q9HCM9 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM39Q9HCM9 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM39Q9HCM9 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM39Q9HCM9 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM39Q9HCM9 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC15.28■□□□□ 0.04
TRIM39Q9HCM9 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM39Q9HCM9 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC15.28■□□□□ 0.04
TRIM39Q9HCM9 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM39Q9HCM9 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM39Q9HCM9 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
TRIM39Q9HCM9 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM39Q9HCM9 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
TRIM39Q9HCM9 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM39Q9HCM9 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC15.27■□□□□ 0.04
TRIM39Q9HCM9 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM39Q9HCM9 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM39Q9HCM9 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
TRIM39Q9HCM9 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC15.27■□□□□ 0.04
TRIM39Q9HCM9 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC15.27■□□□□ 0.04
TRIM39Q9HCM9 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM39Q9HCM9 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC15.27■□□□□ 0.04
TRIM39Q9HCM9 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC15.27■□□□□ 0.04
TRIM39Q9HCM9 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM39Q9HCM9 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC15.27■□□□□ 0.04
TRIM39Q9HCM9 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM39Q9HCM9 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC15.27■□□□□ 0.04
TRIM39Q9HCM9 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
TRIM39Q9HCM9 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM39Q9HCM9 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
TRIM39Q9HCM9 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC15.27■□□□□ 0.04
TRIM39Q9HCM9 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC15.27■□□□□ 0.04
TRIM39Q9HCM9 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM39Q9HCM9 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms