Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC14.85□□□□□ -0.03
COL28A1Q2UY09 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL28A1Q2UY09 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
COL28A1Q2UY09 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC14.85□□□□□ -0.03
COL28A1Q2UY09 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
COL28A1Q2UY09 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
COL28A1Q2UY09 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL28A1Q2UY09 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
COL28A1Q2UY09 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL28A1Q2UY09 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC14.85□□□□□ -0.03
COL28A1Q2UY09 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC14.84□□□□□ -0.03
COL28A1Q2UY09 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL28A1Q2UY09 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL28A1Q2UY09 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL28A1Q2UY09 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
COL28A1Q2UY09 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
COL28A1Q2UY09 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL28A1Q2UY09 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
COL28A1Q2UY09 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL28A1Q2UY09 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
COL28A1Q2UY09 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
COL28A1Q2UY09 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC14.84□□□□□ -0.03
COL28A1Q2UY09 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC14.84□□□□□ -0.03
COL28A1Q2UY09 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL28A1Q2UY09 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL28A1Q2UY09 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL28A1Q2UY09 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC14.84□□□□□ -0.03
COL28A1Q2UY09 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
COL28A1Q2UY09 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
COL28A1Q2UY09 FO393414.2-201ENST00000405153 598 ntBASIC14.84□□□□□ -0.03
COL28A1Q2UY09 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL28A1Q2UY09 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
COL28A1Q2UY09 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC14.84□□□□□ -0.03
COL28A1Q2UY09 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
COL28A1Q2UY09 AL133466.1-201ENST00000447582 150 ntBASIC14.84□□□□□ -0.03
COL28A1Q2UY09 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC14.84□□□□□ -0.03
COL28A1Q2UY09 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC14.84□□□□□ -0.03
COL28A1Q2UY09 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC14.84□□□□□ -0.03
COL28A1Q2UY09 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC14.84□□□□□ -0.03
COL28A1Q2UY09 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC14.84□□□□□ -0.03
COL28A1Q2UY09 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC14.84□□□□□ -0.03
COL28A1Q2UY09 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
COL28A1Q2UY09 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL28A1Q2UY09 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL28A1Q2UY09 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
COL28A1Q2UY09 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL28A1Q2UY09 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC14.84□□□□□ -0.03
COL28A1Q2UY09 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC14.84□□□□□ -0.03
COL28A1Q2UY09 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
COL28A1Q2UY09 FAM45BP-202ENST00000592932 1624 ntBASIC14.84□□□□□ -0.03
COL28A1Q2UY09 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL28A1Q2UY09 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL28A1Q2UY09 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
COL28A1Q2UY09 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
COL28A1Q2UY09 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
COL28A1Q2UY09 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC14.83□□□□□ -0.03
COL28A1Q2UY09 AL365203.3-201ENST00000609742 2057 ntBASIC14.83□□□□□ -0.03
COL28A1Q2UY09 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL28A1Q2UY09 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL28A1Q2UY09 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC14.83□□□□□ -0.04
COL28A1Q2UY09 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL28A1Q2UY09 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL28A1Q2UY09 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL28A1Q2UY09 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
COL28A1Q2UY09 C1QBPP1-201ENST00000400117 770 ntBASIC14.83□□□□□ -0.04
COL28A1Q2UY09 CNN2P8-201ENST00000421872 913 ntBASIC14.83□□□□□ -0.04
COL28A1Q2UY09 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC14.83□□□□□ -0.04
COL28A1Q2UY09 HIST3H2BA-201ENST00000436555 524 ntBASIC14.83□□□□□ -0.04
COL28A1Q2UY09 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC14.83□□□□□ -0.04
COL28A1Q2UY09 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
COL28A1Q2UY09 AC093433.1-201ENST00000458048 571 ntBASIC14.83□□□□□ -0.04
COL28A1Q2UY09 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
COL28A1Q2UY09 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL28A1Q2UY09 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
COL28A1Q2UY09 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC14.83□□□□□ -0.04
COL28A1Q2UY09 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC14.83□□□□□ -0.04
COL28A1Q2UY09 MIR4321-201ENST00000592276 80 ntBASIC14.83□□□□□ -0.04
COL28A1Q2UY09 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC14.83□□□□□ -0.04
COL28A1Q2UY09 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL28A1Q2UY09 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
COL28A1Q2UY09 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC14.83□□□□□ -0.04
COL28A1Q2UY09 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL28A1Q2UY09 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL28A1Q2UY09 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
COL28A1Q2UY09 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
COL28A1Q2UY09 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL28A1Q2UY09 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC14.83□□□□□ -0.04
COL28A1Q2UY09 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
COL28A1Q2UY09 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC14.83□□□□□ -0.04
COL28A1Q2UY09 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
COL28A1Q2UY09 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL28A1Q2UY09 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL28A1Q2UY09 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC14.83□□□□□ -0.04
COL28A1Q2UY09 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL28A1Q2UY09 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL28A1Q2UY09 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL28A1Q2UY09 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
COL28A1Q2UY09 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL28A1Q2UY09 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC14.82□□□□□ -0.04
COL28A1Q2UY09 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms