Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
HSPG2P98160 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
HSPG2P98160 PCDHB19P-201ENST00000570871 2371 ntBASIC9.17□□□□□ -0.94
HSPG2P98160 MYL4-202ENST00000393450 855 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
HSPG2P98160 EIF4E2-205ENST00000409394 604 ntTSL 3 BASIC9.17□□□□□ -0.94
HSPG2P98160 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC9.17□□□□□ -0.94
HSPG2P98160 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
HSPG2P98160 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC9.17□□□□□ -0.94
HSPG2P98160 AC018638.5-201ENST00000450885 754 ntBASIC9.17□□□□□ -0.94
HSPG2P98160 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
HSPG2P98160 OR5BD1P-201ENST00000532527 817 ntBASIC9.17□□□□□ -0.94
HSPG2P98160 AP003785.1-201ENST00000544959 492 ntTSL 4 BASIC9.17□□□□□ -0.94
HSPG2P98160 DIO3OS-211ENST00000557532 712 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
HSPG2P98160 AC012174.1-201ENST00000562349 714 ntTSL 3 BASIC9.17□□□□□ -0.94
HSPG2P98160 PRMT1P1-201ENST00000604252 1009 ntBASIC9.17□□□□□ -0.94
HSPG2P98160 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
HSPG2P98160 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC9.17□□□□□ -0.94
HSPG2P98160 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC9.17□□□□□ -0.94
HSPG2P98160 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
HSPG2P98160 TXNDC9-201ENST00000264255 1637 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
HSPG2P98160 SNX3-204ENST00000426155 1072 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
HSPG2P98160 AC027612.2-202ENST00000445955 1199 ntBASIC9.17□□□□□ -0.94
HSPG2P98160 AC005993.1-201ENST00000555581 397 ntTSL 5 BASIC9.17□□□□□ -0.94
HSPG2P98160 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC9.17□□□□□ -0.94
HSPG2P98160 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC9.17□□□□□ -0.94
HSPG2P98160 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC9.17□□□□□ -0.94
HSPG2P98160 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC9.17□□□□□ -0.94
HSPG2P98160 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
HSPG2P98160 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC9.17□□□□□ -0.94
HSPG2P98160 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC9.17□□□□□ -0.94
HSPG2P98160 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC9.17□□□□□ -0.94
HSPG2P98160 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC9.17□□□□□ -0.94
HSPG2P98160 SULT1A1-201ENST00000314752 1162 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
HSPG2P98160 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC9.17□□□□□ -0.94
HSPG2P98160 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
HSPG2P98160 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC9.17□□□□□ -0.94
HSPG2P98160 AC019205.2-201ENST00000442007 1083 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
HSPG2P98160 MIR6720-201ENST00000611664 98 ntBASIC9.17□□□□□ -0.94
HSPG2P98160 AC027601.3-201ENST00000622907 509 ntBASIC9.17□□□□□ -0.94
HSPG2P98160 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
HSPG2P98160 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
HSPG2P98160 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
HSPG2P98160 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC9.17□□□□□ -0.94
HSPG2P98160 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC9.17□□□□□ -0.94
HSPG2P98160 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
HSPG2P98160 CASP2-203ENST00000392925 616 ntTSL 3 BASIC9.17□□□□□ -0.94
HSPG2P98160 WASIR1-201ENST00000399966 1054 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
HSPG2P98160 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC9.17□□□□□ -0.94
HSPG2P98160 GNAT1-202ENST00000433068 1224 ntAPPRIS P1 TSL 5 BASIC9.17□□□□□ -0.94
HSPG2P98160 SOD2-205ENST00000444946 917 ntTSL 2 BASIC9.17□□□□□ -0.94
HSPG2P98160 LRRC75A-AS1-213ENST00000484836 821 ntTSL 2 BASIC9.17□□□□□ -0.94
HSPG2P98160 APOPT1-215ENST00000556253 783 ntTSL 3 BASIC9.17□□□□□ -0.94
HSPG2P98160 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC9.17□□□□□ -0.94
HSPG2P98160 ZNF671-203ENST00000596939 977 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
HSPG2P98160 NF1P11-201ENST00000621292 1282 ntBASIC9.17□□□□□ -0.94
HSPG2P98160 AC139713.2-207ENST00000641556 1292 ntBASIC9.17□□□□□ -0.94
HSPG2P98160 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC9.16□□□□□ -0.94
HSPG2P98160 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC9.16□□□□□ -0.94
HSPG2P98160 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC9.16□□□□□ -0.94
HSPG2P98160 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC9.16□□□□□ -0.94
HSPG2P98160 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
HSPG2P98160 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC9.16□□□□□ -0.94
HSPG2P98160 DHRS7-209ENST00000557185 1322 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
HSPG2P98160 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC9.16□□□□□ -0.94
HSPG2P98160 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC9.16□□□□□ -0.94
HSPG2P98160 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC9.16□□□□□ -0.94
HSPG2P98160 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC9.16□□□□□ -0.94
HSPG2P98160 MYBPHL-201ENST00000357155 1372 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
HSPG2P98160 API5-202ENST00000420461 2009 ntTSL 2 BASIC9.16□□□□□ -0.94
HSPG2P98160 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
HSPG2P98160 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
HSPG2P98160 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
HSPG2P98160 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC9.16□□□□□ -0.94
HSPG2P98160 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC9.16□□□□□ -0.94
HSPG2P98160 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC9.16□□□□□ -0.94
HSPG2P98160 DAD1-201ENST00000250498 731 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
HSPG2P98160 TNNT1-202ENST00000356783 934 ntAPPRIS ALT2 TSL 1 (best) BASIC9.16□□□□□ -0.94
HSPG2P98160 KRT18P36-201ENST00000411618 1276 ntBASIC9.16□□□□□ -0.94
HSPG2P98160 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC9.16□□□□□ -0.94
HSPG2P98160 AL121983.2-202ENST00000419983 535 ntTSL 3 BASIC9.16□□□□□ -0.94
HSPG2P98160 KRT8P30-201ENST00000432100 650 ntBASIC9.16□□□□□ -0.94
HSPG2P98160 CIDEC-205ENST00000443115 443 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
HSPG2P98160 AC006529.1-201ENST00000459978 637 ntBASIC9.16□□□□□ -0.94
HSPG2P98160 AL121796.1-201ENST00000505702 466 ntTSL 3 BASIC9.16□□□□□ -0.94
HSPG2P98160 RPS23-204ENST00000507980 836 ntTSL 2 BASIC9.16□□□□□ -0.94
HSPG2P98160 ALG3P1-201ENST00000508806 1114 ntBASIC9.16□□□□□ -0.94
HSPG2P98160 AC011383.1-201ENST00000517474 617 ntTSL 3 BASIC9.16□□□□□ -0.94
HSPG2P98160 AC007656.1-201ENST00000552238 573 ntTSL 4 BASIC9.16□□□□□ -0.94
HSPG2P98160 TRAPPC2L-212ENST00000567312 499 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
HSPG2P98160 USP32P3-202ENST00000583574 611 ntTSL 3 BASIC9.16□□□□□ -0.94
HSPG2P98160 NMRK2-202ENST00000593949 869 ntAPPRIS ALT2 TSL 1 (best) BASIC9.16□□□□□ -0.94
HSPG2P98160 NMRK2-204ENST00000599576 691 ntTSL 3 BASIC9.16□□□□□ -0.94
HSPG2P98160 IZUMO1-201ENST00000332955 1621 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
HSPG2P98160 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
HSPG2P98160 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
HSPG2P98160 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC9.16□□□□□ -0.94
HSPG2P98160 TNRC18P3-201ENST00000441896 2691 ntBASIC9.16□□□□□ -0.94
HSPG2P98160 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC9.16□□□□□ -0.94
HSPG2P98160 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
HSPG2P98160 NNMT-203ENST00000535401 1867 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
Retrieved 100 of 98,524 protein–RNA pairs in 59.2 ms