Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC14.54□□□□□ -0.08
SOX3P41225 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC14.54□□□□□ -0.08
SOX3P41225 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC14.54□□□□□ -0.08
SOX3P41225 AC008494.3-201ENST00000606615 944 ntBASIC14.54□□□□□ -0.08
SOX3P41225 CECR7-204ENST00000609932 568 ntTSL 2 BASIC14.54□□□□□ -0.08
SOX3P41225 AC012645.4-201ENST00000610691 1061 ntBASIC14.54□□□□□ -0.08
SOX3P41225 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC14.54□□□□□ -0.08
SOX3P41225 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC14.54□□□□□ -0.08
SOX3P41225 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC14.54□□□□□ -0.08
SOX3P41225 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
SOX3P41225 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
SOX3P41225 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC14.54□□□□□ -0.08
SOX3P41225 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC14.54□□□□□ -0.08
SOX3P41225 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SOX3P41225 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SOX3P41225 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SOX3P41225 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SOX3P41225 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SOX3P41225 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SOX3P41225 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SOX3P41225 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SOX3P41225 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
SOX3P41225 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC14.54□□□□□ -0.08
SOX3P41225 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
SOX3P41225 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SOX3P41225 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SOX3P41225 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SOX3P41225 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
SOX3P41225 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
SOX3P41225 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC14.53□□□□□ -0.08
SOX3P41225 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SOX3P41225 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
SOX3P41225 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SOX3P41225 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC14.53□□□□□ -0.08
SOX3P41225 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SOX3P41225 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC14.53□□□□□ -0.08
SOX3P41225 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC14.53□□□□□ -0.08
SOX3P41225 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC14.53□□□□□ -0.08
SOX3P41225 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
SOX3P41225 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SOX3P41225 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC14.53□□□□□ -0.08
SOX3P41225 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SOX3P41225 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SOX3P41225 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
SOX3P41225 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SOX3P41225 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC14.53□□□□□ -0.08
SOX3P41225 GSAP-205ENST00000430584 600 ntTSL 5 BASIC14.53□□□□□ -0.08
SOX3P41225 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SOX3P41225 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC14.53□□□□□ -0.08
SOX3P41225 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
SOX3P41225 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC14.53□□□□□ -0.08
SOX3P41225 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC14.53□□□□□ -0.08
SOX3P41225 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC14.53□□□□□ -0.08
SOX3P41225 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC14.53□□□□□ -0.08
SOX3P41225 AC005225.4-201ENST00000557330 545 ntBASIC14.53□□□□□ -0.08
SOX3P41225 WASH4P-201ENST00000564273 1246 ntBASIC14.53□□□□□ -0.08
SOX3P41225 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC14.53□□□□□ -0.08
SOX3P41225 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SOX3P41225 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SOX3P41225 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SOX3P41225 CICP4-201ENST00000447359 2812 ntBASIC14.53□□□□□ -0.08
SOX3P41225 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
SOX3P41225 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC14.53□□□□□ -0.08
SOX3P41225 AC005089.1-201ENST00000619486 2241 ntBASIC14.53□□□□□ -0.08
SOX3P41225 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SOX3P41225 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC14.53□□□□□ -0.08
SOX3P41225 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
SOX3P41225 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC14.53□□□□□ -0.08
SOX3P41225 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SOX3P41225 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SOX3P41225 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
SOX3P41225 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC14.52□□□□□ -0.08
SOX3P41225 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC14.52□□□□□ -0.08
SOX3P41225 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SOX3P41225 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
SOX3P41225 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SOX3P41225 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC14.52□□□□□ -0.08
SOX3P41225 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SOX3P41225 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SOX3P41225 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
SOX3P41225 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC14.52□□□□□ -0.08
SOX3P41225 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC14.52□□□□□ -0.08
SOX3P41225 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.08
SOX3P41225 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC14.52□□□□□ -0.08
SOX3P41225 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC14.52□□□□□ -0.08
SOX3P41225 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SOX3P41225 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
SOX3P41225 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
SOX3P41225 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SOX3P41225 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC14.52□□□□□ -0.08
SOX3P41225 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC14.52□□□□□ -0.08
SOX3P41225 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
SOX3P41225 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SOX3P41225 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
SOX3P41225 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SOX3P41225 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
SOX3P41225 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SOX3P41225 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC14.52□□□□□ -0.09
SOX3P41225 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
SOX3P41225 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms