Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC15.35■□□□□ 0.05
MSH3P20585 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC15.35■□□□□ 0.05
MSH3P20585 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC15.35■□□□□ 0.05
MSH3P20585 GPR39-203ENST00000622084 900 ntTSL 5 BASIC15.35■□□□□ 0.05
MSH3P20585 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
MSH3P20585 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
MSH3P20585 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC15.35■□□□□ 0.05
MSH3P20585 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
MSH3P20585 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MSH3P20585 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC15.35■□□□□ 0.05
MSH3P20585 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MSH3P20585 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MSH3P20585 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
MSH3P20585 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MSH3P20585 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC15.35■□□□□ 0.05
MSH3P20585 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC15.34■□□□□ 0.05
MSH3P20585 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
MSH3P20585 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
MSH3P20585 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
MSH3P20585 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC15.34■□□□□ 0.05
MSH3P20585 AP002414.2-201ENST00000591780 3365 ntBASIC15.34■□□□□ 0.05
MSH3P20585 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
MSH3P20585 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
MSH3P20585 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
MSH3P20585 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
MSH3P20585 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
MSH3P20585 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
MSH3P20585 OR2I1P-209ENST00000641730 5365 ntBASIC15.34■□□□□ 0.05
MSH3P20585 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
MSH3P20585 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
MSH3P20585 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
MSH3P20585 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
MSH3P20585 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
MSH3P20585 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
MSH3P20585 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC15.34■□□□□ 0.05
MSH3P20585 VDAC1P7-201ENST00000462417 847 ntBASIC15.34■□□□□ 0.05
MSH3P20585 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC15.34■□□□□ 0.05
MSH3P20585 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC15.34■□□□□ 0.05
MSH3P20585 AC092552.1-201ENST00000547243 906 ntBASIC15.34■□□□□ 0.05
MSH3P20585 SPDYE22P-201ENST00000582158 798 ntBASIC15.34■□□□□ 0.05
MSH3P20585 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC15.34■□□□□ 0.05
MSH3P20585 TMEM261P1-201ENST00000604899 340 ntBASIC15.34■□□□□ 0.05
MSH3P20585 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC15.34■□□□□ 0.05
MSH3P20585 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC15.34■□□□□ 0.05
MSH3P20585 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC15.34■□□□□ 0.05
MSH3P20585 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC15.34■□□□□ 0.05
MSH3P20585 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
MSH3P20585 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
MSH3P20585 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC15.34■□□□□ 0.05
MSH3P20585 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
MSH3P20585 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
MSH3P20585 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
MSH3P20585 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
MSH3P20585 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
MSH3P20585 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
MSH3P20585 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.05
MSH3P20585 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.05
MSH3P20585 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
MSH3P20585 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
MSH3P20585 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.05
MSH3P20585 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
MSH3P20585 PGR-210ENST00000619228 3038 ntTSL 5 BASIC15.33■□□□□ 0.05
MSH3P20585 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
MSH3P20585 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
MSH3P20585 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
MSH3P20585 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC15.33■□□□□ 0.04
MSH3P20585 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
MSH3P20585 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
MSH3P20585 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC15.33■□□□□ 0.04
MSH3P20585 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
MSH3P20585 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
MSH3P20585 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
MSH3P20585 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
MSH3P20585 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
MSH3P20585 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.04
MSH3P20585 SUN1-204ENST00000403868 978 ntTSL 2 BASIC15.33■□□□□ 0.04
MSH3P20585 AC098850.1-201ENST00000419919 790 ntBASIC15.33■□□□□ 0.04
MSH3P20585 AC134915.1-201ENST00000426461 574 ntBASIC15.33■□□□□ 0.04
MSH3P20585 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC15.33■□□□□ 0.04
MSH3P20585 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC15.33■□□□□ 0.04
MSH3P20585 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC15.33■□□□□ 0.04
MSH3P20585 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
MSH3P20585 BRI3BPP1-201ENST00000594224 787 ntBASIC15.33■□□□□ 0.04
MSH3P20585 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC15.33■□□□□ 0.04
MSH3P20585 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC15.33■□□□□ 0.04
MSH3P20585 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
MSH3P20585 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
MSH3P20585 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC15.33■□□□□ 0.04
MSH3P20585 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
MSH3P20585 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
MSH3P20585 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC15.33■□□□□ 0.04
MSH3P20585 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC15.33■□□□□ 0.04
MSH3P20585 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
MSH3P20585 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
MSH3P20585 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC15.33■□□□□ 0.04
MSH3P20585 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
MSH3P20585 C18orf15-201ENST00000623680 2534 ntBASIC15.33■□□□□ 0.04
MSH3P20585 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
MSH3P20585 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
MSH3P20585 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms