Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC24.63■■□□□ 1.53
IFT140Q96RY7 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
IFT140Q96RY7 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC24.63■■□□□ 1.53
IFT140Q96RY7 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC24.63■■□□□ 1.53
IFT140Q96RY7 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
IFT140Q96RY7 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC24.63■■□□□ 1.53
IFT140Q96RY7 AC004522.1-201ENST00000419978 654 ntBASIC24.63■■□□□ 1.53
IFT140Q96RY7 AL391832.2-203ENST00000423175 554 ntTSL 3 BASIC24.63■■□□□ 1.53
IFT140Q96RY7 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC24.63■■□□□ 1.53
IFT140Q96RY7 BRSK1-203ENST00000585418 1104 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
IFT140Q96RY7 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC24.63■■□□□ 1.53
IFT140Q96RY7 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
IFT140Q96RY7 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
IFT140Q96RY7 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
IFT140Q96RY7 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC24.62■■□□□ 1.53
IFT140Q96RY7 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC24.62■■□□□ 1.53
IFT140Q96RY7 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
IFT140Q96RY7 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC24.62■■□□□ 1.53
IFT140Q96RY7 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
IFT140Q96RY7 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC24.62■■□□□ 1.53
IFT140Q96RY7 MC3R-201ENST00000243911 1084 ntAPPRIS P1 BASIC24.62■■□□□ 1.53
IFT140Q96RY7 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
IFT140Q96RY7 RBM4-203ENST00000398692 921 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
IFT140Q96RY7 PPM1N-205ENST00000401705 771 ntTSL 3 BASIC24.62■■□□□ 1.53
IFT140Q96RY7 AL158166.1-201ENST00000433110 371 ntTSL 2 BASIC24.62■■□□□ 1.53
IFT140Q96RY7 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC24.62■■□□□ 1.53
IFT140Q96RY7 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
IFT140Q96RY7 AC004540.1-204ENST00000449537 727 ntTSL 2 BASIC24.62■■□□□ 1.53
IFT140Q96RY7 RBM4-207ENST00000506523 654 ntTSL 3 BASIC24.62■■□□□ 1.53
IFT140Q96RY7 POLR2J3-217ENST00000513438 546 ntTSL 3 BASIC24.62■■□□□ 1.53
IFT140Q96RY7 SRP14-204ENST00000558720 780 ntTSL 2 BASIC24.62■■□□□ 1.53
IFT140Q96RY7 AC007250.1-201ENST00000608934 338 ntBASIC24.62■■□□□ 1.53
IFT140Q96RY7 AC027559.1-203ENST00000635726 517 ntTSL 5 BASIC24.62■■□□□ 1.53
IFT140Q96RY7 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
IFT140Q96RY7 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC24.62■■□□□ 1.53
IFT140Q96RY7 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
IFT140Q96RY7 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC24.62■■□□□ 1.53
IFT140Q96RY7 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC24.61■■□□□ 1.53
IFT140Q96RY7 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
IFT140Q96RY7 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC24.61■■□□□ 1.53
IFT140Q96RY7 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
IFT140Q96RY7 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
IFT140Q96RY7 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
IFT140Q96RY7 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC24.61■■□□□ 1.53
IFT140Q96RY7 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC24.61■■□□□ 1.53
IFT140Q96RY7 XPNPEP2-201ENST00000371105 912 ntTSL 2 BASIC24.61■■□□□ 1.53
IFT140Q96RY7 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC24.61■■□□□ 1.53
IFT140Q96RY7 CELP-201ENST00000411440 1249 ntTSL 5 BASIC24.61■■□□□ 1.53
IFT140Q96RY7 AL451105.2-201ENST00000413763 1234 ntTSL 5 BASIC24.61■■□□□ 1.53
IFT140Q96RY7 CSNK1G2P1-201ENST00000442675 955 ntBASIC24.61■■□□□ 1.53
IFT140Q96RY7 AP003390.1-201ENST00000533253 523 ntTSL 5 BASIC24.61■■□□□ 1.53
IFT140Q96RY7 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC24.61■■□□□ 1.53
IFT140Q96RY7 HERC2P11-201ENST00000562845 725 ntBASIC24.61■■□□□ 1.53
IFT140Q96RY7 AC100756.2-201ENST00000569537 736 ntBASIC24.61■■□□□ 1.53
IFT140Q96RY7 AP005212.2-201ENST00000584979 510 ntBASIC24.61■■□□□ 1.53
IFT140Q96RY7 AC010632.2-201ENST00000588369 1224 ntBASIC24.61■■□□□ 1.53
IFT140Q96RY7 AC004528.1-201ENST00000588380 641 ntTSL 5 BASIC24.61■■□□□ 1.53
IFT140Q96RY7 OCEL1-206ENST00000597836 1044 ntAPPRIS ALT2 TSL 2 BASIC24.61■■□□□ 1.53
IFT140Q96RY7 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
IFT140Q96RY7 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
IFT140Q96RY7 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC24.61■■□□□ 1.53
IFT140Q96RY7 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC24.61■■□□□ 1.53
IFT140Q96RY7 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC24.61■■□□□ 1.53
IFT140Q96RY7 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
IFT140Q96RY7 AC007613.1-201ENST00000572811 2597 ntBASIC24.61■■□□□ 1.53
IFT140Q96RY7 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
IFT140Q96RY7 CTBP2P8-201ENST00000422584 1330 ntBASIC24.6■■□□□ 1.53
IFT140Q96RY7 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
IFT140Q96RY7 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC24.6■■□□□ 1.53
IFT140Q96RY7 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC24.6■■□□□ 1.53
IFT140Q96RY7 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC24.6■■□□□ 1.53
IFT140Q96RY7 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC24.6■■□□□ 1.53
IFT140Q96RY7 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC24.6■■□□□ 1.53
IFT140Q96RY7 SERBP1P2-201ENST00000436888 1164 ntBASIC24.6■■□□□ 1.53
IFT140Q96RY7 AP001062.3-202ENST00000444409 619 ntTSL 2 BASIC24.6■■□□□ 1.53
IFT140Q96RY7 RN7SL23P-201ENST00000484055 275 ntBASIC24.6■■□□□ 1.53
IFT140Q96RY7 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC24.6■■□□□ 1.53
IFT140Q96RY7 AP005264.6-204ENST00000588436 719 ntBASIC24.6■■□□□ 1.53
IFT140Q96RY7 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC24.6■■□□□ 1.53
IFT140Q96RY7 AC006483.2-201ENST00000609813 515 ntBASIC24.6■■□□□ 1.53
IFT140Q96RY7 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC24.6■■□□□ 1.53
IFT140Q96RY7 AC011451.3-201ENST00000634951 582 ntTSL 3 BASIC24.6■■□□□ 1.53
IFT140Q96RY7 AC106774.7-201ENST00000638408 597 ntAPPRIS P1 BASIC24.6■■□□□ 1.53
IFT140Q96RY7 AC106774.6-201ENST00000638483 597 ntAPPRIS P1 BASIC24.6■■□□□ 1.53
IFT140Q96RY7 AC233724.20-201ENST00000638842 597 ntAPPRIS P1 BASIC24.6■■□□□ 1.53
IFT140Q96RY7 AC233724.19-201ENST00000639969 597 ntAPPRIS P1 BASIC24.6■■□□□ 1.53
IFT140Q96RY7 AC106774.5-201ENST00000640558 597 ntAPPRIS P1 BASIC24.6■■□□□ 1.53
IFT140Q96RY7 AC233724.18-201ENST00000640803 597 ntAPPRIS P1 BASIC24.6■■□□□ 1.53
IFT140Q96RY7 AC233724.21-201ENST00000640846 597 ntAPPRIS P1 BASIC24.6■■□□□ 1.53
IFT140Q96RY7 MIR3936HG-204ENST00000621103 1793 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
IFT140Q96RY7 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
IFT140Q96RY7 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC24.6■■□□□ 1.53
IFT140Q96RY7 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC24.6■■□□□ 1.53
IFT140Q96RY7 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC24.6■■□□□ 1.53
IFT140Q96RY7 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
IFT140Q96RY7 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
IFT140Q96RY7 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC24.6■■□□□ 1.53
IFT140Q96RY7 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC24.6■■□□□ 1.53
IFT140Q96RY7 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
IFT140Q96RY7 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC24.59■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms