Protein–RNA interactions for Protein: Q8N9L1

ZIC4, Zinc finger protein ZIC 4, humanhuman

Predictions only

Length 334 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZIC4Q8N9L1 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
ZIC4Q8N9L1 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC13.58□□□□□ -0.23
ZIC4Q8N9L1 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC13.58□□□□□ -0.23
ZIC4Q8N9L1 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 CU639417.3-201ENST00000624240 1404 ntBASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 AL139094.1-201ENST00000405549 1188 ntBASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 AC011495.1-201ENST00000498085 584 ntBASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 AC132938.2-201ENST00000579188 680 ntBASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 AC010319.3-201ENST00000597028 470 ntBASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 ATF5-205ENST00000600336 682 ntTSL 2 BASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 CECR7-204ENST00000609932 568 ntTSL 2 BASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 AP005019.2-201ENST00000615104 511 ntBASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 AL591163.1-201ENST00000641757 987 ntBASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 LINC00528-201ENST00000600723 2160 ntBASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
ZIC4Q8N9L1 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC13.57□□□□□ -0.24
ZIC4Q8N9L1 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
ZIC4Q8N9L1 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC13.57□□□□□ -0.24
ZIC4Q8N9L1 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
ZIC4Q8N9L1 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC13.57□□□□□ -0.24
ZIC4Q8N9L1 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC13.57□□□□□ -0.24
ZIC4Q8N9L1 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC13.57□□□□□ -0.24
ZIC4Q8N9L1 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
ZIC4Q8N9L1 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC13.57□□□□□ -0.24
ZIC4Q8N9L1 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
ZIC4Q8N9L1 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
ZIC4Q8N9L1 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
ZIC4Q8N9L1 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
ZIC4Q8N9L1 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
ZIC4Q8N9L1 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
ZIC4Q8N9L1 MSTO2P-201ENST00000314835 1709 ntBASIC13.57□□□□□ -0.24
ZIC4Q8N9L1 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
ZIC4Q8N9L1 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
ZIC4Q8N9L1 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
ZIC4Q8N9L1 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
ZIC4Q8N9L1 RNU1-114P-201ENST00000365297 166 ntBASIC13.57□□□□□ -0.24
ZIC4Q8N9L1 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC13.57□□□□□ -0.24
ZIC4Q8N9L1 APOA1-205ENST00000375329 927 ntTSL 2 BASIC13.57□□□□□ -0.24
ZIC4Q8N9L1 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
ZIC4Q8N9L1 GRAP-202ENST00000395635 834 ntTSL 2 BASIC13.57□□□□□ -0.24
ZIC4Q8N9L1 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
ZIC4Q8N9L1 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
ZIC4Q8N9L1 AC114812.1-204ENST00000449669 728 ntBASIC13.57□□□□□ -0.24
ZIC4Q8N9L1 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
ZIC4Q8N9L1 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC13.57□□□□□ -0.24
ZIC4Q8N9L1 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC13.57□□□□□ -0.24
ZIC4Q8N9L1 NEU3-203ENST00000529024 581 ntTSL 3 BASIC13.57□□□□□ -0.24
ZIC4Q8N9L1 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
ZIC4Q8N9L1 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC13.57□□□□□ -0.24
ZIC4Q8N9L1 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC13.57□□□□□ -0.24
ZIC4Q8N9L1 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
ZIC4Q8N9L1 AC005225.4-201ENST00000557330 545 ntBASIC13.57□□□□□ -0.24
ZIC4Q8N9L1 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC13.57□□□□□ -0.24
ZIC4Q8N9L1 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC13.57□□□□□ -0.24
ZIC4Q8N9L1 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC13.57□□□□□ -0.24
ZIC4Q8N9L1 KSR1-207ENST00000578981 748 ntTSL 4 BASIC13.57□□□□□ -0.24
ZIC4Q8N9L1 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC13.57□□□□□ -0.24
ZIC4Q8N9L1 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC13.57□□□□□ -0.24
ZIC4Q8N9L1 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms