Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 AC098614.1-201ENST00000368528 745 ntBASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 AC092933.1-201ENST00000393644 945 ntBASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 PGF-202ENST00000405431 666 ntTSL 5 BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 GPS2P2-201ENST00000430745 888 ntBASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 AC241585.1-201ENST00000433527 519 ntBASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 AC004890.2-204ENST00000481968 304 ntBASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 AC079140.1-201ENST00000508039 487 ntBASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 SSH2-210ENST00000582084 560 ntTSL 3 BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 SPTSSB-204ENST00000617024 1292 ntBASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 WAPL-201ENST00000263070 5987 ntTSL 5 BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 JAKMIP3-201ENST00000298622 6626 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 MROH2A-201ENST00000389758 5355 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
PDLIM3Q53GG5 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 CICP13-201ENST00000422015 2789 ntBASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 TET3-201ENST00000305799 5174 ntTSL 5 BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 AL009178.2-201ENST00000597278 2719 ntBASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 ELK2AP-201ENST00000392510 1007 ntBASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 FALEC-201ENST00000416894 566 ntTSL 3 BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 AC140658.5-201ENST00000438532 169 ntBASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 TP53TG3HP-202ENST00000569755 579 ntBASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
PDLIM3Q53GG5 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC12.87□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 58.4 ms