Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC18.44■□□□□ 0.54
CCDC88AQ3V6T2 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CCDC88AQ3V6T2 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CCDC88AQ3V6T2 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
CCDC88AQ3V6T2 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CCDC88AQ3V6T2 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CCDC88AQ3V6T2 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CCDC88AQ3V6T2 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
CCDC88AQ3V6T2 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CCDC88AQ3V6T2 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC18.44■□□□□ 0.54
CCDC88AQ3V6T2 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC18.44■□□□□ 0.54
CCDC88AQ3V6T2 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CCDC88AQ3V6T2 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
CCDC88AQ3V6T2 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC18.44■□□□□ 0.54
CCDC88AQ3V6T2 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CCDC88AQ3V6T2 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC18.44■□□□□ 0.54
CCDC88AQ3V6T2 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC18.44■□□□□ 0.54
CCDC88AQ3V6T2 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC18.44■□□□□ 0.54
CCDC88AQ3V6T2 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
CCDC88AQ3V6T2 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC18.44■□□□□ 0.54
CCDC88AQ3V6T2 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC18.44■□□□□ 0.54
CCDC88AQ3V6T2 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC18.44■□□□□ 0.54
CCDC88AQ3V6T2 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CCDC88AQ3V6T2 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CCDC88AQ3V6T2 STK33-217ENST00000534493 1895 ntTSL 2 BASIC18.44■□□□□ 0.54
CCDC88AQ3V6T2 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CCDC88AQ3V6T2 AC074138.1-201ENST00000611182 1303 ntBASIC18.44■□□□□ 0.54
CCDC88AQ3V6T2 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC18.44■□□□□ 0.54
CCDC88AQ3V6T2 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CCDC88AQ3V6T2 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CCDC88AQ3V6T2 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CCDC88AQ3V6T2 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CCDC88AQ3V6T2 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CCDC88AQ3V6T2 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC88AQ3V6T2 AC026410.1-201ENST00000507366 1101 ntBASIC18.43■□□□□ 0.54
CCDC88AQ3V6T2 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC18.43■□□□□ 0.54
CCDC88AQ3V6T2 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC88AQ3V6T2 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC88AQ3V6T2 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC18.43■□□□□ 0.54
CCDC88AQ3V6T2 AC104333.4-201ENST00000632866 554 ntTSL 3 BASIC18.43■□□□□ 0.54
CCDC88AQ3V6T2 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
CCDC88AQ3V6T2 DKFZP434H168-201ENST00000567381 1905 ntBASIC18.43■□□□□ 0.54
CCDC88AQ3V6T2 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC18.43■□□□□ 0.54
CCDC88AQ3V6T2 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC88AQ3V6T2 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC18.43■□□□□ 0.54
CCDC88AQ3V6T2 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC88AQ3V6T2 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC88AQ3V6T2 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
CCDC88AQ3V6T2 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC18.43■□□□□ 0.54
CCDC88AQ3V6T2 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC88AQ3V6T2 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
CCDC88AQ3V6T2 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC88AQ3V6T2 AC079112.1-201ENST00000454972 939 ntBASIC18.43■□□□□ 0.54
CCDC88AQ3V6T2 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC18.43■□□□□ 0.54
CCDC88AQ3V6T2 AC090857.1-201ENST00000527400 390 ntBASIC18.43■□□□□ 0.54
CCDC88AQ3V6T2 FOS-204ENST00000554617 796 ntTSL 2 BASIC18.43■□□□□ 0.54
CCDC88AQ3V6T2 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC88AQ3V6T2 NAT9-211ENST00000580632 799 ntTSL 3 BASIC18.43■□□□□ 0.54
CCDC88AQ3V6T2 MIR6842-201ENST00000612539 65 ntBASIC18.43■□□□□ 0.54
CCDC88AQ3V6T2 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC88AQ3V6T2 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC88AQ3V6T2 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
CCDC88AQ3V6T2 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC88AQ3V6T2 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC88AQ3V6T2 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC88AQ3V6T2 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC18.43■□□□□ 0.54
CCDC88AQ3V6T2 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC88AQ3V6T2 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC88AQ3V6T2 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC18.42■□□□□ 0.54
CCDC88AQ3V6T2 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC88AQ3V6T2 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC88AQ3V6T2 CES3-203ENST00000543856 3178 ntTSL 2 BASIC18.42■□□□□ 0.54
CCDC88AQ3V6T2 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC88AQ3V6T2 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC88AQ3V6T2 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC88AQ3V6T2 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC88AQ3V6T2 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC88AQ3V6T2 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC88AQ3V6T2 NPPC-202ENST00000409852 1051 ntAPPRIS P1 TSL 3 BASIC18.42■□□□□ 0.54
CCDC88AQ3V6T2 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC18.42■□□□□ 0.54
CCDC88AQ3V6T2 MEF2C-AS2-201ENST00000510274 463 ntTSL 5 BASIC18.42■□□□□ 0.54
CCDC88AQ3V6T2 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC18.42■□□□□ 0.54
CCDC88AQ3V6T2 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC18.42■□□□□ 0.54
CCDC88AQ3V6T2 DNM1P30-201ENST00000563586 452 ntBASIC18.42■□□□□ 0.54
CCDC88AQ3V6T2 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC18.42■□□□□ 0.54
CCDC88AQ3V6T2 AC009084.3-201ENST00000623356 437 ntBASIC18.42■□□□□ 0.54
CCDC88AQ3V6T2 RPL35-206ENST00000629845 340 ntTSL 5 BASIC18.42■□□□□ 0.54
CCDC88AQ3V6T2 MBLAC2-202ENST00000514906 1936 ntBASIC18.42■□□□□ 0.54
CCDC88AQ3V6T2 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC88AQ3V6T2 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
CCDC88AQ3V6T2 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC88AQ3V6T2 FKBP4P6-201ENST00000457486 1332 ntBASIC18.42■□□□□ 0.54
CCDC88AQ3V6T2 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
CCDC88AQ3V6T2 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC88AQ3V6T2 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
CCDC88AQ3V6T2 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC88AQ3V6T2 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC18.42■□□□□ 0.54
CCDC88AQ3V6T2 AP000593.2-201ENST00000542775 1433 ntBASIC18.42■□□□□ 0.54
CCDC88AQ3V6T2 AC244394.1-201ENST00000435000 1665 ntBASIC18.42■□□□□ 0.54
CCDC88AQ3V6T2 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms