Protein–RNA interactions for Protein: P62068

USP46, Ubiquitin carboxyl-terminal hydrolase 46, humanhuman

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP46P62068 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
USP46P62068 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC16.22■□□□□ 0.19
USP46P62068 PKD1P5-201ENST00000532415 10291 ntBASIC16.22■□□□□ 0.19
USP46P62068 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
USP46P62068 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC16.22■□□□□ 0.19
USP46P62068 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
USP46P62068 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
USP46P62068 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
USP46P62068 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
USP46P62068 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
USP46P62068 LBX2-201ENST00000341396 886 ntTSL 3 BASIC16.22■□□□□ 0.19
USP46P62068 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC16.22■□□□□ 0.19
USP46P62068 BRF1-202ENST00000379932 884 ntTSL 5 BASIC16.22■□□□□ 0.19
USP46P62068 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC16.22■□□□□ 0.19
USP46P62068 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
USP46P62068 AC012497.1-201ENST00000429392 575 ntBASIC16.22■□□□□ 0.19
USP46P62068 KRT43P-201ENST00000434019 910 ntBASIC16.22■□□□□ 0.19
USP46P62068 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC16.22■□□□□ 0.19
USP46P62068 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC16.22■□□□□ 0.19
USP46P62068 AC022137.2-201ENST00000503482 481 ntBASIC16.22■□□□□ 0.19
USP46P62068 AC024475.1-201ENST00000528480 605 ntTSL 5 BASIC16.22■□□□□ 0.19
USP46P62068 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC16.22■□□□□ 0.19
USP46P62068 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
USP46P62068 NAA38-206ENST00000576384 424 ntTSL 2 BASIC16.22■□□□□ 0.19
USP46P62068 MIR6752-201ENST00000618442 71 ntBASIC16.22■□□□□ 0.19
USP46P62068 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
USP46P62068 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
USP46P62068 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
USP46P62068 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC16.22■□□□□ 0.19
USP46P62068 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
USP46P62068 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC16.22■□□□□ 0.19
USP46P62068 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
USP46P62068 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
USP46P62068 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
USP46P62068 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
USP46P62068 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
USP46P62068 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC16.22■□□□□ 0.19
USP46P62068 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC16.21■□□□□ 0.19
USP46P62068 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
USP46P62068 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
USP46P62068 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC16.21■□□□□ 0.19
USP46P62068 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
USP46P62068 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
USP46P62068 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
USP46P62068 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
USP46P62068 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
USP46P62068 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC16.21■□□□□ 0.19
USP46P62068 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
USP46P62068 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
USP46P62068 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
USP46P62068 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
USP46P62068 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
USP46P62068 ACKR1-201ENST00000368121 1240 ntBASIC16.21■□□□□ 0.19
USP46P62068 USB1-202ENST00000423271 1217 ntTSL 2 BASIC16.21■□□□□ 0.19
USP46P62068 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC16.21■□□□□ 0.19
USP46P62068 CTBP2P5-201ENST00000454986 1264 ntBASIC16.21■□□□□ 0.19
USP46P62068 FTH1P14-201ENST00000482930 551 ntBASIC16.21■□□□□ 0.19
USP46P62068 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
USP46P62068 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC16.21■□□□□ 0.19
USP46P62068 GNRHR2-203ENST00000581100 1187 ntBASIC16.21■□□□□ 0.19
USP46P62068 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC16.21■□□□□ 0.19
USP46P62068 AC244669.2-201ENST00000612320 853 ntBASIC16.21■□□□□ 0.19
USP46P62068 RPS24-214ENST00000613865 538 ntTSL 5 BASIC16.21■□□□□ 0.19
USP46P62068 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
USP46P62068 COX11-210ENST00000639671 696 ntBASIC16.21■□□□□ 0.19
USP46P62068 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
USP46P62068 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
USP46P62068 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
USP46P62068 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
USP46P62068 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC16.21■□□□□ 0.19
USP46P62068 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
USP46P62068 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
USP46P62068 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC16.21■□□□□ 0.19
USP46P62068 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
USP46P62068 DKFZP434H168-201ENST00000567381 1905 ntBASIC16.21■□□□□ 0.19
USP46P62068 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC16.21■□□□□ 0.19
USP46P62068 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
USP46P62068 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
USP46P62068 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC16.21■□□□□ 0.18
USP46P62068 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
USP46P62068 AC093525.8-201ENST00000624099 1342 ntBASIC16.2■□□□□ 0.18
USP46P62068 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC16.2■□□□□ 0.18
USP46P62068 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC16.2■□□□□ 0.18
USP46P62068 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC16.2■□□□□ 0.18
USP46P62068 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
USP46P62068 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
USP46P62068 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
USP46P62068 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC16.2■□□□□ 0.18
USP46P62068 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
USP46P62068 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
USP46P62068 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
USP46P62068 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
USP46P62068 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
USP46P62068 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
USP46P62068 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
USP46P62068 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC16.2■□□□□ 0.18
USP46P62068 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
USP46P62068 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
USP46P62068 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC16.2■□□□□ 0.18
USP46P62068 AL355864.2-201ENST00000447420 863 ntBASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms