Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SDCBPO00560 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC13.19□□□□□ -0.3
SDCBPO00560 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC13.19□□□□□ -0.3
SDCBPO00560 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC13.19□□□□□ -0.3
SDCBPO00560 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC13.19□□□□□ -0.3
SDCBPO00560 NAA38-207ENST00000576861 556 ntTSL 3 BASIC13.19□□□□□ -0.3
SDCBPO00560 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC13.19□□□□□ -0.3
SDCBPO00560 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
SDCBPO00560 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC13.19□□□□□ -0.3
SDCBPO00560 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SDCBPO00560 AC084121.4-201ENST00000641598 221 ntBASIC13.19□□□□□ -0.3
SDCBPO00560 AF228730.8-201ENST00000642140 221 ntBASIC13.19□□□□□ -0.3
SDCBPO00560 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC13.19□□□□□ -0.3
SDCBPO00560 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
SDCBPO00560 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC13.19□□□□□ -0.3
SDCBPO00560 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC13.19□□□□□ -0.3
SDCBPO00560 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC13.19□□□□□ -0.3
SDCBPO00560 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
SDCBPO00560 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SDCBPO00560 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC13.19□□□□□ -0.3
SDCBPO00560 AC005840.4-201ENST00000541242 2494 ntBASIC13.19□□□□□ -0.3
SDCBPO00560 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
SDCBPO00560 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SDCBPO00560 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SDCBPO00560 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC13.19□□□□□ -0.3
SDCBPO00560 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC13.19□□□□□ -0.3
SDCBPO00560 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
SDCBPO00560 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
SDCBPO00560 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SDCBPO00560 GRK6P1-201ENST00000400595 1711 ntBASIC13.19□□□□□ -0.3
SDCBPO00560 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
SDCBPO00560 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC13.19□□□□□ -0.3
SDCBPO00560 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SDCBPO00560 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SDCBPO00560 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SDCBPO00560 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SDCBPO00560 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SDCBPO00560 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC13.18□□□□□ -0.3
SDCBPO00560 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC13.18□□□□□ -0.3
SDCBPO00560 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC13.18□□□□□ -0.3
SDCBPO00560 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SDCBPO00560 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC13.18□□□□□ -0.3
SDCBPO00560 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC13.18□□□□□ -0.3
SDCBPO00560 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC13.18□□□□□ -0.3
SDCBPO00560 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SDCBPO00560 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SDCBPO00560 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
SDCBPO00560 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SDCBPO00560 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
SDCBPO00560 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC13.18□□□□□ -0.3
SDCBPO00560 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
SDCBPO00560 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC13.18□□□□□ -0.3
SDCBPO00560 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC13.18□□□□□ -0.3
SDCBPO00560 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC13.18□□□□□ -0.3
SDCBPO00560 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SDCBPO00560 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
SDCBPO00560 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
SDCBPO00560 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SDCBPO00560 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SDCBPO00560 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SDCBPO00560 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC13.18□□□□□ -0.3
SDCBPO00560 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC13.18□□□□□ -0.3
SDCBPO00560 PHKG1P2-201ENST00000457537 863 ntBASIC13.18□□□□□ -0.3
SDCBPO00560 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC13.18□□□□□ -0.3
SDCBPO00560 YBX1P5-201ENST00000509441 847 ntBASIC13.18□□□□□ -0.3
SDCBPO00560 AP000344.2-201ENST00000512987 629 ntBASIC13.18□□□□□ -0.3
SDCBPO00560 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC13.18□□□□□ -0.3
SDCBPO00560 ALG1L8P-201ENST00000533887 760 ntBASIC13.18□□□□□ -0.3
SDCBPO00560 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SDCBPO00560 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC13.18□□□□□ -0.3
SDCBPO00560 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC13.18□□□□□ -0.3
SDCBPO00560 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC13.18□□□□□ -0.3
SDCBPO00560 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC13.18□□□□□ -0.3
SDCBPO00560 AL513210.1-201ENST00000629608 234 ntBASIC13.18□□□□□ -0.3
SDCBPO00560 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC13.18□□□□□ -0.3
SDCBPO00560 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC13.18□□□□□ -0.3
SDCBPO00560 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
SDCBPO00560 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SDCBPO00560 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
SDCBPO00560 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC13.18□□□□□ -0.3
SDCBPO00560 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SDCBPO00560 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SDCBPO00560 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC13.18□□□□□ -0.3
SDCBPO00560 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC13.18□□□□□ -0.3
SDCBPO00560 PPP1R26P4-201ENST00000619065 3527 ntBASIC13.18□□□□□ -0.3
SDCBPO00560 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SDCBPO00560 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SDCBPO00560 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC13.18□□□□□ -0.3
SDCBPO00560 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SDCBPO00560 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
SDCBPO00560 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC13.18□□□□□ -0.3
SDCBPO00560 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SDCBPO00560 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC13.18□□□□□ -0.3
SDCBPO00560 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SDCBPO00560 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SDCBPO00560 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SDCBPO00560 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
SDCBPO00560 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SDCBPO00560 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC13.17□□□□□ -0.3
SDCBPO00560 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms