Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
VPS4AQ9UN37 CELP-203ENST00000624767 2414 ntTSL 5 BASIC15.03■□□□□ -0
VPS4AQ9UN37 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
VPS4AQ9UN37 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
VPS4AQ9UN37 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
VPS4AQ9UN37 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
VPS4AQ9UN37 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
VPS4AQ9UN37 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC15.02■□□□□ -0
VPS4AQ9UN37 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
VPS4AQ9UN37 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC15.02■□□□□ -0
VPS4AQ9UN37 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC15.02■□□□□ -0
VPS4AQ9UN37 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
VPS4AQ9UN37 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
VPS4AQ9UN37 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC15.02■□□□□ -0
VPS4AQ9UN37 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC15.02■□□□□ -0
VPS4AQ9UN37 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC15.02■□□□□ -0
VPS4AQ9UN37 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC15.02■□□□□ -0
VPS4AQ9UN37 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC15.02■□□□□ -0
VPS4AQ9UN37 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
VPS4AQ9UN37 AC087499.5-201ENST00000452760 1342 ntBASIC15.02■□□□□ -0
VPS4AQ9UN37 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC15.02■□□□□ -0
VPS4AQ9UN37 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC15.02■□□□□ -0
VPS4AQ9UN37 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
VPS4AQ9UN37 AL353705.2-201ENST00000428243 662 ntBASIC15.02■□□□□ -0
VPS4AQ9UN37 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC15.02■□□□□ -0
VPS4AQ9UN37 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC15.02■□□□□ -0
VPS4AQ9UN37 AL139010.1-201ENST00000454878 894 ntBASIC15.02■□□□□ -0
VPS4AQ9UN37 ACA64.2-201ENST00000459014 129 ntBASIC15.02■□□□□ -0
VPS4AQ9UN37 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC15.02■□□□□ -0
VPS4AQ9UN37 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC15.02■□□□□ -0
VPS4AQ9UN37 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC15.02■□□□□ -0
VPS4AQ9UN37 API5-211ENST00000534695 560 ntTSL 5 BASIC15.02■□□□□ -0
VPS4AQ9UN37 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC15.02■□□□□ -0
VPS4AQ9UN37 POLE2-203ENST00000553805 496 ntTSL 2 BASIC15.02■□□□□ -0
VPS4AQ9UN37 RAB43P1-201ENST00000561790 589 ntBASIC15.02■□□□□ -0
VPS4AQ9UN37 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC15.02■□□□□ -0
VPS4AQ9UN37 AC026979.3-201ENST00000607315 403 ntBASIC15.02■□□□□ -0
VPS4AQ9UN37 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC15.02■□□□□ -0
VPS4AQ9UN37 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC15.02□□□□□ -0.01
VPS4AQ9UN37 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
VPS4AQ9UN37 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
VPS4AQ9UN37 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
VPS4AQ9UN37 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
VPS4AQ9UN37 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
VPS4AQ9UN37 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
VPS4AQ9UN37 AC097376.2-205ENST00000610159 5334 ntBASIC15.02□□□□□ -0.01
VPS4AQ9UN37 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC15.02□□□□□ -0.01
VPS4AQ9UN37 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
VPS4AQ9UN37 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC15.02□□□□□ -0.01
VPS4AQ9UN37 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
VPS4AQ9UN37 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
VPS4AQ9UN37 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC15.02□□□□□ -0.01
VPS4AQ9UN37 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02□□□□□ -0.01
VPS4AQ9UN37 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02□□□□□ -0.01
VPS4AQ9UN37 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
VPS4AQ9UN37 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC15.02□□□□□ -0.01
VPS4AQ9UN37 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
VPS4AQ9UN37 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
VPS4AQ9UN37 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
VPS4AQ9UN37 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC15.01□□□□□ -0.01
VPS4AQ9UN37 AC127383.1-201ENST00000444697 1800 ntBASIC15.01□□□□□ -0.01
VPS4AQ9UN37 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC15.01□□□□□ -0.01
VPS4AQ9UN37 CETN4P-206ENST00000642099 2168 ntBASIC15.01□□□□□ -0.01
VPS4AQ9UN37 AL391825.1-201ENST00000457671 1364 ntBASIC15.01□□□□□ -0.01
VPS4AQ9UN37 C18orf15-201ENST00000623680 2534 ntBASIC15.01□□□□□ -0.01
VPS4AQ9UN37 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC15.01□□□□□ -0.01
VPS4AQ9UN37 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VPS4AQ9UN37 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VPS4AQ9UN37 AL136982.4-201ENST00000437689 1740 ntBASIC15.01□□□□□ -0.01
VPS4AQ9UN37 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
VPS4AQ9UN37 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC15.01□□□□□ -0.01
VPS4AQ9UN37 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VPS4AQ9UN37 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
VPS4AQ9UN37 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VPS4AQ9UN37 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
VPS4AQ9UN37 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
VPS4AQ9UN37 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
VPS4AQ9UN37 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VPS4AQ9UN37 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC15.01□□□□□ -0.01
VPS4AQ9UN37 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC15.01□□□□□ -0.01
VPS4AQ9UN37 AC009477.1-201ENST00000452936 217 ntBASIC15.01□□□□□ -0.01
VPS4AQ9UN37 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
VPS4AQ9UN37 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC15.01□□□□□ -0.01
VPS4AQ9UN37 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC15.01□□□□□ -0.01
VPS4AQ9UN37 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC15.01□□□□□ -0.01
VPS4AQ9UN37 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC15.01□□□□□ -0.01
VPS4AQ9UN37 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC15.01□□□□□ -0.01
VPS4AQ9UN37 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC15.01□□□□□ -0.01
VPS4AQ9UN37 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC15.01□□□□□ -0.01
VPS4AQ9UN37 AC112693.3-201ENST00000624819 1983 ntBASIC15.01□□□□□ -0.01
VPS4AQ9UN37 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VPS4AQ9UN37 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC15.01□□□□□ -0.01
VPS4AQ9UN37 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
VPS4AQ9UN37 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
VPS4AQ9UN37 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
VPS4AQ9UN37 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC15.01□□□□□ -0.01
VPS4AQ9UN37 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VPS4AQ9UN37 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VPS4AQ9UN37 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
VPS4AQ9UN37 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 58.5 ms