Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
RPL39P62891 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
RPL39P62891 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
RPL39P62891 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC10.97□□□□□ -0.65
RPL39P62891 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
RPL39P62891 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC10.97□□□□□ -0.65
RPL39P62891 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
RPL39P62891 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC10.96□□□□□ -0.65
RPL39P62891 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC10.96□□□□□ -0.65
RPL39P62891 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
RPL39P62891 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC10.96□□□□□ -0.65
RPL39P62891 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
RPL39P62891 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
RPL39P62891 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC10.96□□□□□ -0.65
RPL39P62891 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC10.96□□□□□ -0.65
RPL39P62891 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
RPL39P62891 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC10.96□□□□□ -0.65
RPL39P62891 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC10.96□□□□□ -0.65
RPL39P62891 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC10.96□□□□□ -0.65
RPL39P62891 AP001267.2-201ENST00000532619 2086 ntBASIC10.96□□□□□ -0.65
RPL39P62891 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
RPL39P62891 TKT-201ENST00000296289 1931 ntTSL 5 BASIC10.96□□□□□ -0.65
RPL39P62891 AC113367.3-201ENST00000508316 1912 ntBASIC10.96□□□□□ -0.65
RPL39P62891 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC10.96□□□□□ -0.65
RPL39P62891 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC10.96□□□□□ -0.65
RPL39P62891 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC10.96□□□□□ -0.65
RPL39P62891 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC10.96□□□□□ -0.65
RPL39P62891 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
RPL39P62891 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC10.96□□□□□ -0.65
RPL39P62891 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
RPL39P62891 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC10.96□□□□□ -0.65
RPL39P62891 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC10.96□□□□□ -0.65
RPL39P62891 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC10.96□□□□□ -0.65
RPL39P62891 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
RPL39P62891 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
RPL39P62891 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
RPL39P62891 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
RPL39P62891 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC10.96□□□□□ -0.65
RPL39P62891 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC10.96□□□□□ -0.65
RPL39P62891 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC10.96□□□□□ -0.65
RPL39P62891 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC10.96□□□□□ -0.65
RPL39P62891 RHOQP3-201ENST00000437982 621 ntBASIC10.96□□□□□ -0.65
RPL39P62891 HCG4B-203ENST00000450128 991 ntBASIC10.96□□□□□ -0.65
RPL39P62891 AF186996.4-201ENST00000467186 377 ntBASIC10.96□□□□□ -0.65
RPL39P62891 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC10.96□□□□□ -0.65
RPL39P62891 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC10.96□□□□□ -0.65
RPL39P62891 BMF-207ENST00000559701 630 ntTSL 3 BASIC10.96□□□□□ -0.65
RPL39P62891 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC10.96□□□□□ -0.65
RPL39P62891 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC10.96□□□□□ -0.65
RPL39P62891 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC10.96□□□□□ -0.65
RPL39P62891 AC007064.4-201ENST00000637740 555 ntBASIC10.96□□□□□ -0.65
RPL39P62891 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
RPL39P62891 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
RPL39P62891 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
RPL39P62891 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC10.96□□□□□ -0.65
RPL39P62891 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
RPL39P62891 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
RPL39P62891 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC10.96□□□□□ -0.66
RPL39P62891 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
RPL39P62891 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC10.96□□□□□ -0.66
RPL39P62891 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC10.96□□□□□ -0.66
RPL39P62891 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC10.96□□□□□ -0.66
RPL39P62891 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC10.96□□□□□ -0.66
RPL39P62891 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC10.96□□□□□ -0.66
RPL39P62891 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC10.96□□□□□ -0.66
RPL39P62891 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
RPL39P62891 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
RPL39P62891 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC10.95□□□□□ -0.66
RPL39P62891 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC10.95□□□□□ -0.66
RPL39P62891 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC10.95□□□□□ -0.66
RPL39P62891 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC10.95□□□□□ -0.66
RPL39P62891 AMT-224ENST00000635808 1610 ntTSL 5 BASIC10.95□□□□□ -0.66
RPL39P62891 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC10.95□□□□□ -0.66
RPL39P62891 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC10.95□□□□□ -0.66
RPL39P62891 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
RPL39P62891 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC10.95□□□□□ -0.66
RPL39P62891 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
RPL39P62891 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC10.95□□□□□ -0.66
RPL39P62891 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
RPL39P62891 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
RPL39P62891 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC10.95□□□□□ -0.66
RPL39P62891 UPK3BP1-201ENST00000428678 509 ntBASIC10.95□□□□□ -0.66
RPL39P62891 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC10.95□□□□□ -0.66
RPL39P62891 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC10.95□□□□□ -0.66
RPL39P62891 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
RPL39P62891 RNA5SP410-201ENST00000516285 106 ntBASIC10.95□□□□□ -0.66
RPL39P62891 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC10.95□□□□□ -0.66
RPL39P62891 HNRNPUP1-201ENST00000554987 333 ntBASIC10.95□□□□□ -0.66
RPL39P62891 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC10.95□□□□□ -0.66
RPL39P62891 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC10.95□□□□□ -0.66
RPL39P62891 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC10.95□□□□□ -0.66
RPL39P62891 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
RPL39P62891 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC10.95□□□□□ -0.66
RPL39P62891 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC10.95□□□□□ -0.66
RPL39P62891 MED16-214ENST00000617672 554 ntTSL 5 BASIC10.95□□□□□ -0.66
RPL39P62891 AL161645.1-201ENST00000622716 1255 ntBASIC10.95□□□□□ -0.66
RPL39P62891 AC148477.8-201ENST00000624298 468 ntBASIC10.95□□□□□ -0.66
RPL39P62891 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
RPL39P62891 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
RPL39P62891 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC10.95□□□□□ -0.66
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms