Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
MRE11P49959 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
MRE11P49959 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
MRE11P49959 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC18.1■□□□□ 0.49
MRE11P49959 RBSN-204ENST00000449050 903 ntTSL 2 BASIC18.1■□□□□ 0.49
MRE11P49959 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
MRE11P49959 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC18.1■□□□□ 0.49
MRE11P49959 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC18.1■□□□□ 0.49
MRE11P49959 YTHDF3-AS1-201ENST00000603538 718 ntBASIC18.1■□□□□ 0.49
MRE11P49959 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
MRE11P49959 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
MRE11P49959 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
MRE11P49959 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
MRE11P49959 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
MRE11P49959 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
MRE11P49959 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MRE11P49959 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC18.09■□□□□ 0.49
MRE11P49959 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MRE11P49959 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
MRE11P49959 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC18.09■□□□□ 0.49
MRE11P49959 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MRE11P49959 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
MRE11P49959 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
MRE11P49959 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MRE11P49959 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC18.09■□□□□ 0.49
MRE11P49959 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MRE11P49959 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MRE11P49959 AL356585.2-201ENST00000625078 2396 ntBASIC18.09■□□□□ 0.49
MRE11P49959 AL122018.1-201ENST00000446607 2310 ntBASIC18.09■□□□□ 0.49
MRE11P49959 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC18.09■□□□□ 0.49
MRE11P49959 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
MRE11P49959 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MRE11P49959 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC18.09■□□□□ 0.49
MRE11P49959 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MRE11P49959 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MRE11P49959 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
MRE11P49959 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
MRE11P49959 FAM86GP-201ENST00000448322 971 ntBASIC18.09■□□□□ 0.49
MRE11P49959 AC087163.2-201ENST00000457299 853 ntBASIC18.09■□□□□ 0.49
MRE11P49959 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC18.09■□□□□ 0.49
MRE11P49959 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC18.09■□□□□ 0.49
MRE11P49959 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC18.09■□□□□ 0.49
MRE11P49959 MTDHP4-201ENST00000600287 670 ntBASIC18.09■□□□□ 0.49
MRE11P49959 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
MRE11P49959 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC18.09■□□□□ 0.49
MRE11P49959 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MRE11P49959 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
MRE11P49959 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
MRE11P49959 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MRE11P49959 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
MRE11P49959 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC18.09■□□□□ 0.49
MRE11P49959 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC18.09■□□□□ 0.49
MRE11P49959 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
MRE11P49959 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC18.08■□□□□ 0.49
MRE11P49959 LRRFIP1P1-201ENST00000498774 2246 ntBASIC18.08■□□□□ 0.49
MRE11P49959 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC18.08■□□□□ 0.49
MRE11P49959 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC18.08■□□□□ 0.49
MRE11P49959 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
MRE11P49959 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
MRE11P49959 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
MRE11P49959 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
MRE11P49959 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC18.08■□□□□ 0.49
MRE11P49959 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
MRE11P49959 VMO1-203ENST00000416307 712 ntTSL 2 BASIC18.08■□□□□ 0.48
MRE11P49959 SLC4A1APP2-201ENST00000424054 1259 ntBASIC18.08■□□□□ 0.48
MRE11P49959 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC18.08■□□□□ 0.48
MRE11P49959 AC108751.1-201ENST00000490852 363 ntBASIC18.08■□□□□ 0.48
MRE11P49959 NMU-203ENST00000507338 658 ntTSL 3 BASIC18.08■□□□□ 0.48
MRE11P49959 AL031432.2-201ENST00000566714 459 ntBASIC18.08■□□□□ 0.48
MRE11P49959 AL928711.1-201ENST00000570165 459 ntBASIC18.08■□□□□ 0.48
MRE11P49959 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC18.08■□□□□ 0.48
MRE11P49959 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC18.08■□□□□ 0.48
MRE11P49959 AL139288.1-201ENST00000623748 933 ntBASIC18.08■□□□□ 0.48
MRE11P49959 AC073592.4-201ENST00000623827 446 ntBASIC18.08■□□□□ 0.48
MRE11P49959 SLC23A1-201ENST00000348729 2299 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
MRE11P49959 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC18.08■□□□□ 0.48
MRE11P49959 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC18.08■□□□□ 0.48
MRE11P49959 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
MRE11P49959 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC18.08■□□□□ 0.48
MRE11P49959 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
MRE11P49959 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
MRE11P49959 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC18.08■□□□□ 0.48
MRE11P49959 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC18.08■□□□□ 0.48
MRE11P49959 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
MRE11P49959 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
MRE11P49959 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
MRE11P49959 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC18.08■□□□□ 0.48
MRE11P49959 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.48
MRE11P49959 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
MRE11P49959 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
MRE11P49959 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
MRE11P49959 INTS4P1-201ENST00000438455 1935 ntBASIC18.08■□□□□ 0.48
MRE11P49959 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
MRE11P49959 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
MRE11P49959 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
MRE11P49959 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC18.07■□□□□ 0.48
MRE11P49959 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
MRE11P49959 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
MRE11P49959 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
MRE11P49959 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms