Protein–RNA interactions for Protein: P41273

TNFSF9, Tumor necrosis factor ligand superfamily member 9, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFSF9P41273 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TNFSF9P41273 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC16.61■□□□□ 0.25
TNFSF9P41273 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC16.61■□□□□ 0.25
TNFSF9P41273 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC16.61■□□□□ 0.25
TNFSF9P41273 ACTBP8-201ENST00000403258 1108 ntBASIC16.61■□□□□ 0.25
TNFSF9P41273 MIR1909-201ENST00000411312 80 ntBASIC16.61■□□□□ 0.25
TNFSF9P41273 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
TNFSF9P41273 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
TNFSF9P41273 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TNFSF9P41273 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC16.61■□□□□ 0.25
TNFSF9P41273 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC16.61■□□□□ 0.25
TNFSF9P41273 AC114812.1-204ENST00000449669 728 ntBASIC16.61■□□□□ 0.25
TNFSF9P41273 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
TNFSF9P41273 IGHV3-71-201ENST00000523324 359 ntBASIC16.61■□□□□ 0.25
TNFSF9P41273 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC16.61■□□□□ 0.25
TNFSF9P41273 NOP2-220ENST00000545915 630 ntTSL 2 BASIC16.61■□□□□ 0.25
TNFSF9P41273 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TNFSF9P41273 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC16.61■□□□□ 0.25
TNFSF9P41273 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC16.61■□□□□ 0.25
TNFSF9P41273 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC16.61■□□□□ 0.25
TNFSF9P41273 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC16.61■□□□□ 0.25
TNFSF9P41273 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
TNFSF9P41273 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TNFSF9P41273 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TNFSF9P41273 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TNFSF9P41273 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TNFSF9P41273 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TNFSF9P41273 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TNFSF9P41273 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TNFSF9P41273 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TNFSF9P41273 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TNFSF9P41273 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC16.61■□□□□ 0.25
TNFSF9P41273 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC16.61■□□□□ 0.25
TNFSF9P41273 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC16.61■□□□□ 0.25
TNFSF9P41273 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
TNFSF9P41273 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TNFSF9P41273 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
TNFSF9P41273 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TNFSF9P41273 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC16.6■□□□□ 0.25
TNFSF9P41273 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC16.6■□□□□ 0.25
TNFSF9P41273 PDIA3P1-201ENST00000471856 1510 ntBASIC16.6■□□□□ 0.25
TNFSF9P41273 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TNFSF9P41273 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TNFSF9P41273 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
TNFSF9P41273 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC16.6■□□□□ 0.25
TNFSF9P41273 AC144831.1-201ENST00000573312 2656 ntBASIC16.6■□□□□ 0.25
TNFSF9P41273 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
TNFSF9P41273 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC16.6■□□□□ 0.25
TNFSF9P41273 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC16.6■□□□□ 0.25
TNFSF9P41273 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TNFSF9P41273 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
TNFSF9P41273 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
TNFSF9P41273 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
TNFSF9P41273 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
TNFSF9P41273 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC16.6■□□□□ 0.25
TNFSF9P41273 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
TNFSF9P41273 NUS1P3-201ENST00000423502 862 ntBASIC16.6■□□□□ 0.25
TNFSF9P41273 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC16.6■□□□□ 0.25
TNFSF9P41273 KRT18P25-201ENST00000508931 1278 ntBASIC16.6■□□□□ 0.25
TNFSF9P41273 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC16.6■□□□□ 0.25
TNFSF9P41273 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC16.6■□□□□ 0.25
TNFSF9P41273 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC16.6■□□□□ 0.25
TNFSF9P41273 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
TNFSF9P41273 IFT20-216ENST00000588477 774 ntTSL 5 BASIC16.6■□□□□ 0.25
TNFSF9P41273 MIR6775-201ENST00000617557 69 ntBASIC16.6■□□□□ 0.25
TNFSF9P41273 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
TNFSF9P41273 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TNFSF9P41273 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
TNFSF9P41273 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC16.6■□□□□ 0.25
TNFSF9P41273 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TNFSF9P41273 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC16.6■□□□□ 0.25
TNFSF9P41273 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC16.6■□□□□ 0.25
TNFSF9P41273 REXO1L2P-201ENST00000425429 2069 ntBASIC16.6■□□□□ 0.25
TNFSF9P41273 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC16.6■□□□□ 0.25
TNFSF9P41273 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TNFSF9P41273 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
TNFSF9P41273 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
TNFSF9P41273 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
TNFSF9P41273 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TNFSF9P41273 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TNFSF9P41273 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TNFSF9P41273 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC16.59■□□□□ 0.25
TNFSF9P41273 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TNFSF9P41273 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TNFSF9P41273 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
TNFSF9P41273 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TNFSF9P41273 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TNFSF9P41273 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC16.59■□□□□ 0.25
TNFSF9P41273 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TNFSF9P41273 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TNFSF9P41273 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC16.59■□□□□ 0.25
TNFSF9P41273 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TNFSF9P41273 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TNFSF9P41273 AL645937.2-201ENST00000396808 931 ntBASIC16.59■□□□□ 0.25
TNFSF9P41273 PES1-204ENST00000402284 2144 ntTSL 5 BASIC16.59■□□□□ 0.25
TNFSF9P41273 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TNFSF9P41273 EIF3FP3-201ENST00000434851 1086 ntBASIC16.59■□□□□ 0.25
TNFSF9P41273 AC234783.1-201ENST00000441761 496 ntBASIC16.59■□□□□ 0.25
TNFSF9P41273 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC16.59■□□□□ 0.25
TNFSF9P41273 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 279 ms