Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.26
COL8A1P27658 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
COL8A1P27658 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.26
COL8A1P27658 AC106886.4-201ENST00000623557 2502 ntBASIC13.46□□□□□ -0.26
COL8A1P27658 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
COL8A1P27658 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
COL8A1P27658 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC13.45□□□□□ -0.26
COL8A1P27658 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
COL8A1P27658 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC13.45□□□□□ -0.26
COL8A1P27658 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC13.45□□□□□ -0.26
COL8A1P27658 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC13.45□□□□□ -0.26
COL8A1P27658 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL8A1P27658 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL8A1P27658 PCDHB19P-201ENST00000570871 2371 ntBASIC13.45□□□□□ -0.26
COL8A1P27658 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL8A1P27658 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL8A1P27658 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
COL8A1P27658 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
COL8A1P27658 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC13.45□□□□□ -0.26
COL8A1P27658 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC13.45□□□□□ -0.26
COL8A1P27658 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL8A1P27658 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL8A1P27658 PCDHA14-201ENST00000506751 2298 ntBASIC13.45□□□□□ -0.26
COL8A1P27658 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC13.45□□□□□ -0.26
COL8A1P27658 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC13.45□□□□□ -0.26
COL8A1P27658 OS9-205ENST00000413095 1660 ntTSL 2 BASIC13.45□□□□□ -0.26
COL8A1P27658 TK1-203ENST00000588734 1681 ntTSL 2 BASIC13.45□□□□□ -0.26
COL8A1P27658 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL8A1P27658 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC13.45□□□□□ -0.26
COL8A1P27658 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
COL8A1P27658 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
COL8A1P27658 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC13.45□□□□□ -0.26
COL8A1P27658 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
COL8A1P27658 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL8A1P27658 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC13.45□□□□□ -0.26
COL8A1P27658 CEP164P1-201ENST00000455142 418 ntBASIC13.45□□□□□ -0.26
COL8A1P27658 AC021723.1-201ENST00000486306 515 ntBASIC13.45□□□□□ -0.26
COL8A1P27658 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC13.45□□□□□ -0.26
COL8A1P27658 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
COL8A1P27658 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC13.45□□□□□ -0.26
COL8A1P27658 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC13.45□□□□□ -0.26
COL8A1P27658 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL8A1P27658 AC141586.1-203ENST00000567242 366 ntBASIC13.45□□□□□ -0.26
COL8A1P27658 WT1-AS_6.1-201ENST00000614919 121 ntBASIC13.45□□□□□ -0.26
COL8A1P27658 CFTRP2-201ENST00000634304 199 ntBASIC13.45□□□□□ -0.26
COL8A1P27658 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC13.45□□□□□ -0.26
COL8A1P27658 AL805961.1-201ENST00000642026 753 ntBASIC13.45□□□□□ -0.26
COL8A1P27658 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL8A1P27658 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL8A1P27658 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL8A1P27658 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
COL8A1P27658 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL8A1P27658 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC13.45□□□□□ -0.26
COL8A1P27658 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL8A1P27658 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC13.45□□□□□ -0.26
COL8A1P27658 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL8A1P27658 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
COL8A1P27658 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
COL8A1P27658 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL8A1P27658 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
COL8A1P27658 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL8A1P27658 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL8A1P27658 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL8A1P27658 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
COL8A1P27658 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL8A1P27658 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
COL8A1P27658 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
COL8A1P27658 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC13.44□□□□□ -0.26
COL8A1P27658 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC13.44□□□□□ -0.26
COL8A1P27658 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC13.44□□□□□ -0.26
COL8A1P27658 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
COL8A1P27658 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL8A1P27658 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL8A1P27658 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
COL8A1P27658 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
COL8A1P27658 AC046158.3-201ENST00000624947 2558 ntBASIC13.44□□□□□ -0.26
COL8A1P27658 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC13.44□□□□□ -0.26
COL8A1P27658 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL8A1P27658 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
COL8A1P27658 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL8A1P27658 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC13.44□□□□□ -0.26
COL8A1P27658 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL8A1P27658 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL8A1P27658 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL8A1P27658 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL8A1P27658 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL8A1P27658 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL8A1P27658 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL8A1P27658 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC13.44□□□□□ -0.26
COL8A1P27658 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL8A1P27658 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC13.44□□□□□ -0.26
COL8A1P27658 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL8A1P27658 RPSAP31-201ENST00000416648 895 ntBASIC13.44□□□□□ -0.26
COL8A1P27658 PFN2-202ENST00000423691 911 ntTSL 2 BASIC13.44□□□□□ -0.26
COL8A1P27658 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
COL8A1P27658 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC13.44□□□□□ -0.26
COL8A1P27658 OSMR-AS1-202ENST00000512519 837 ntTSL 2 BASIC13.44□□□□□ -0.26
COL8A1P27658 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC13.44□□□□□ -0.26
COL8A1P27658 AL161670.2-201ENST00000557650 1227 ntBASIC13.44□□□□□ -0.26
COL8A1P27658 EID1-202ENST00000560490 584 ntTSL 3 BASIC13.44□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms