Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 AC020904.3-201ENST00000624199 442 ntBASIC11.67□□□□□ -0.54
COL6A5A8TX70 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
COL6A5A8TX70 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC11.67□□□□□ -0.54
COL6A5A8TX70 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC11.67□□□□□ -0.54
COL6A5A8TX70 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC11.67□□□□□ -0.54
COL6A5A8TX70 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC11.67□□□□□ -0.54
COL6A5A8TX70 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
COL6A5A8TX70 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
COL6A5A8TX70 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
COL6A5A8TX70 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.54
COL6A5A8TX70 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
COL6A5A8TX70 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC11.67□□□□□ -0.54
COL6A5A8TX70 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
COL6A5A8TX70 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC11.67□□□□□ -0.54
COL6A5A8TX70 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
COL6A5A8TX70 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC11.67□□□□□ -0.54
COL6A5A8TX70 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
COL6A5A8TX70 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
COL6A5A8TX70 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC11.67□□□□□ -0.54
COL6A5A8TX70 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
COL6A5A8TX70 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
COL6A5A8TX70 OR2K2-201ENST00000302681 1078 ntAPPRIS P1 BASIC11.67□□□□□ -0.54
COL6A5A8TX70 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
COL6A5A8TX70 UQCC2-201ENST00000374214 432 ntTSL 5 BASIC11.67□□□□□ -0.54
COL6A5A8TX70 ACTG1P19-201ENST00000418987 1116 ntBASIC11.67□□□□□ -0.54
COL6A5A8TX70 LINC00866-201ENST00000427379 418 ntTSL 2 BASIC11.67□□□□□ -0.54
COL6A5A8TX70 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC11.67□□□□□ -0.54
COL6A5A8TX70 AC117945.1-201ENST00000451375 463 ntTSL 3 BASIC11.67□□□□□ -0.54
COL6A5A8TX70 MRPL43-211ENST00000477279 903 ntTSL 2 BASIC11.67□□□□□ -0.54
COL6A5A8TX70 RHEB-207ENST00000496004 744 ntTSL 2 BASIC11.67□□□□□ -0.54
COL6A5A8TX70 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
COL6A5A8TX70 AC120498.5-201ENST00000561757 299 ntBASIC11.67□□□□□ -0.54
COL6A5A8TX70 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC11.67□□□□□ -0.54
COL6A5A8TX70 APOC4-202ENST00000592954 615 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
COL6A5A8TX70 AC007326.1-201ENST00000604539 458 ntBASIC11.67□□□□□ -0.54
COL6A5A8TX70 AL512324.3-201ENST00000619383 882 ntBASIC11.67□□□□□ -0.54
COL6A5A8TX70 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC11.67□□□□□ -0.54
COL6A5A8TX70 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
COL6A5A8TX70 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
COL6A5A8TX70 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
COL6A5A8TX70 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC11.67□□□□□ -0.54
COL6A5A8TX70 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC11.67□□□□□ -0.54
COL6A5A8TX70 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC11.66□□□□□ -0.54
COL6A5A8TX70 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
COL6A5A8TX70 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
COL6A5A8TX70 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC11.66□□□□□ -0.54
COL6A5A8TX70 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
COL6A5A8TX70 FAM168A-202ENST00000356467 1767 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
COL6A5A8TX70 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC11.66□□□□□ -0.54
COL6A5A8TX70 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
COL6A5A8TX70 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC11.66□□□□□ -0.54
COL6A5A8TX70 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
COL6A5A8TX70 AC008536.3-201ENST00000623282 1599 ntBASIC11.66□□□□□ -0.54
COL6A5A8TX70 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
COL6A5A8TX70 CHTF8-202ENST00000398235 1073 ntAPPRIS P1 TSL 2 BASIC11.66□□□□□ -0.54
COL6A5A8TX70 HNRNPA1P25-201ENST00000422644 937 ntBASIC11.66□□□□□ -0.54
COL6A5A8TX70 AC012506.1-201ENST00000423706 525 ntTSL 4 BASIC11.66□□□□□ -0.54
COL6A5A8TX70 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC11.66□□□□□ -0.54
COL6A5A8TX70 RPL9-203ENST00000449470 1127 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
COL6A5A8TX70 HIST1H2APS2-201ENST00000454426 370 ntBASIC11.66□□□□□ -0.54
COL6A5A8TX70 AL928742.1-201ENST00000497397 548 ntTSL 4 BASIC11.66□□□□□ -0.54
COL6A5A8TX70 ORAOV1P1-201ENST00000503108 395 ntBASIC11.66□□□□□ -0.54
COL6A5A8TX70 AC114947.1-202ENST00000514136 344 ntBASIC11.66□□□□□ -0.54
COL6A5A8TX70 AC008825.2-201ENST00000603374 718 ntBASIC11.66□□□□□ -0.54
COL6A5A8TX70 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
COL6A5A8TX70 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC11.66□□□□□ -0.54
COL6A5A8TX70 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC11.66□□□□□ -0.54
COL6A5A8TX70 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
COL6A5A8TX70 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC11.66□□□□□ -0.54
COL6A5A8TX70 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
COL6A5A8TX70 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
COL6A5A8TX70 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
COL6A5A8TX70 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
COL6A5A8TX70 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
COL6A5A8TX70 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
COL6A5A8TX70 AC020910.5-201ENST00000623668 1865 ntBASIC11.66□□□□□ -0.54
COL6A5A8TX70 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC11.66□□□□□ -0.54
COL6A5A8TX70 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
COL6A5A8TX70 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
COL6A5A8TX70 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
COL6A5A8TX70 AC008764.6-201ENST00000595909 2069 ntBASIC11.66□□□□□ -0.54
COL6A5A8TX70 ODF3L1-201ENST00000332145 1196 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
COL6A5A8TX70 RNF212-201ENST00000333673 1019 ntAPPRIS ALT2 TSL 2 BASIC11.66□□□□□ -0.54
COL6A5A8TX70 KCNE1-203ENST00000399286 1204 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
COL6A5A8TX70 DKKL1P1-201ENST00000400550 698 ntBASIC11.66□□□□□ -0.54
COL6A5A8TX70 CIDEC-205ENST00000443115 443 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
COL6A5A8TX70 PRKCZ-AS1-202ENST00000444529 622 ntTSL 3 BASIC11.66□□□□□ -0.54
COL6A5A8TX70 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC11.66□□□□□ -0.54
COL6A5A8TX70 ABHD17AP9-201ENST00000561925 548 ntBASIC11.66□□□□□ -0.54
COL6A5A8TX70 EEF1DP7-201ENST00000580496 513 ntBASIC11.66□□□□□ -0.54
COL6A5A8TX70 MIR3188-201ENST00000583494 85 ntBASIC11.66□□□□□ -0.54
COL6A5A8TX70 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC11.66□□□□□ -0.54
COL6A5A8TX70 AC006483.2-201ENST00000609813 515 ntBASIC11.66□□□□□ -0.54
COL6A5A8TX70 AC027559.1-203ENST00000635726 517 ntTSL 5 BASIC11.66□□□□□ -0.54
COL6A5A8TX70 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC11.66□□□□□ -0.54
COL6A5A8TX70 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC11.66□□□□□ -0.54
COL6A5A8TX70 SIGLEC20P-201ENST00000595243 1311 ntBASIC11.66□□□□□ -0.54
COL6A5A8TX70 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
COL6A5A8TX70 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
COL6A5A8TX70 HLF-202ENST00000430986 1385 ntTSL 2 BASIC11.66□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 86.6 ms