Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC19.79■□□□□ 0.76
SMC4Q9NTJ3 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMC4Q9NTJ3 AC067930.6-201ENST00000623257 4947 ntBASIC19.78■□□□□ 0.76
SMC4Q9NTJ3 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
SMC4Q9NTJ3 AC006058.4-201ENST00000624016 1670 ntBASIC19.78■□□□□ 0.76
SMC4Q9NTJ3 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMC4Q9NTJ3 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SMC4Q9NTJ3 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMC4Q9NTJ3 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC19.78■□□□□ 0.76
SMC4Q9NTJ3 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
SMC4Q9NTJ3 TPO-203ENST00000346956 2923 ntTSL 5 BASIC19.78■□□□□ 0.76
SMC4Q9NTJ3 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC19.78■□□□□ 0.76
SMC4Q9NTJ3 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SMC4Q9NTJ3 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
SMC4Q9NTJ3 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMC4Q9NTJ3 AL353779.1-201ENST00000434793 351 ntBASIC19.78■□□□□ 0.76
SMC4Q9NTJ3 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC19.78■□□□□ 0.76
SMC4Q9NTJ3 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMC4Q9NTJ3 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SMC4Q9NTJ3 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC19.78■□□□□ 0.76
SMC4Q9NTJ3 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC19.78■□□□□ 0.76
SMC4Q9NTJ3 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC19.78■□□□□ 0.76
SMC4Q9NTJ3 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC19.78■□□□□ 0.76
SMC4Q9NTJ3 AC008494.3-201ENST00000606615 944 ntBASIC19.78■□□□□ 0.76
SMC4Q9NTJ3 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
SMC4Q9NTJ3 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
SMC4Q9NTJ3 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMC4Q9NTJ3 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMC4Q9NTJ3 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC19.78■□□□□ 0.76
SMC4Q9NTJ3 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMC4Q9NTJ3 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
SMC4Q9NTJ3 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMC4Q9NTJ3 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
SMC4Q9NTJ3 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMC4Q9NTJ3 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMC4Q9NTJ3 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SMC4Q9NTJ3 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC19.78■□□□□ 0.76
SMC4Q9NTJ3 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMC4Q9NTJ3 INTS4P2-202ENST00000614726 2019 ntBASIC19.78■□□□□ 0.76
SMC4Q9NTJ3 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMC4Q9NTJ3 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC19.78■□□□□ 0.76
SMC4Q9NTJ3 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMC4Q9NTJ3 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC19.78■□□□□ 0.76
SMC4Q9NTJ3 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SMC4Q9NTJ3 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SMC4Q9NTJ3 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SMC4Q9NTJ3 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC19.77■□□□□ 0.76
SMC4Q9NTJ3 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SMC4Q9NTJ3 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
SMC4Q9NTJ3 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
SMC4Q9NTJ3 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SMC4Q9NTJ3 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SMC4Q9NTJ3 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SMC4Q9NTJ3 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SMC4Q9NTJ3 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC19.77■□□□□ 0.76
SMC4Q9NTJ3 SUN1-204ENST00000403868 978 ntTSL 2 BASIC19.77■□□□□ 0.76
SMC4Q9NTJ3 AC087499.6-201ENST00000411576 835 ntBASIC19.77■□□□□ 0.76
SMC4Q9NTJ3 PIN1P1-201ENST00000412108 996 ntBASIC19.77■□□□□ 0.76
SMC4Q9NTJ3 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC19.77■□□□□ 0.76
SMC4Q9NTJ3 MYCLP2-201ENST00000449268 967 ntBASIC19.77■□□□□ 0.76
SMC4Q9NTJ3 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC19.77■□□□□ 0.76
SMC4Q9NTJ3 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SMC4Q9NTJ3 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC19.77■□□□□ 0.76
SMC4Q9NTJ3 POLD4-211ENST00000539074 714 ntTSL 3 BASIC19.77■□□□□ 0.76
SMC4Q9NTJ3 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SMC4Q9NTJ3 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC19.77■□□□□ 0.76
SMC4Q9NTJ3 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SMC4Q9NTJ3 GREM1-201ENST00000560677 623 ntTSL 4 BASIC19.77■□□□□ 0.76
SMC4Q9NTJ3 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC19.77■□□□□ 0.76
SMC4Q9NTJ3 WASH4P-201ENST00000564273 1246 ntBASIC19.77■□□□□ 0.76
SMC4Q9NTJ3 SAMD11P1-201ENST00000571429 661 ntBASIC19.77■□□□□ 0.76
SMC4Q9NTJ3 SLC9A7P1-202ENST00000556476 2239 ntBASIC19.77■□□□□ 0.76
SMC4Q9NTJ3 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
SMC4Q9NTJ3 ZBTB45P1-201ENST00000452761 1456 ntBASIC19.77■□□□□ 0.76
SMC4Q9NTJ3 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC19.77■□□□□ 0.76
SMC4Q9NTJ3 AC103702.1-201ENST00000548801 2630 ntBASIC19.77■□□□□ 0.76
SMC4Q9NTJ3 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SMC4Q9NTJ3 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
SMC4Q9NTJ3 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.75
SMC4Q9NTJ3 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.75
SMC4Q9NTJ3 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.75
SMC4Q9NTJ3 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC19.76■□□□□ 0.75
SMC4Q9NTJ3 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMC4Q9NTJ3 POR-201ENST00000394893 2532 ntTSL 5 BASIC19.76■□□□□ 0.75
SMC4Q9NTJ3 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
SMC4Q9NTJ3 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SMC4Q9NTJ3 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
SMC4Q9NTJ3 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC19.76■□□□□ 0.75
SMC4Q9NTJ3 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMC4Q9NTJ3 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SMC4Q9NTJ3 REXO1L2P-201ENST00000425429 2069 ntBASIC19.76■□□□□ 0.75
SMC4Q9NTJ3 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
SMC4Q9NTJ3 WASH3P-207ENST00000560956 1394 ntBASIC19.76■□□□□ 0.75
SMC4Q9NTJ3 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMC4Q9NTJ3 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMC4Q9NTJ3 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
SMC4Q9NTJ3 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC19.76■□□□□ 0.75
SMC4Q9NTJ3 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC19.76■□□□□ 0.75
SMC4Q9NTJ3 GALT-202ENST00000450095 1280 ntTSL 2 BASIC19.76■□□□□ 0.75
SMC4Q9NTJ3 RPL13AP25-201ENST00000484130 612 ntBASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 68.6 ms