Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 TRPA1-201ENST00000262209 5223 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 NCOR2-208ENST00000429285 8475 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 ZMYM3-207ENST00000373998 6067 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 NEK7-201ENST00000367383 586 ntTSL 2 BASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 TPM4P1-201ENST00000436100 807 ntBASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 RNA5SP416-201ENST00000516838 111 ntBASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 AC034105.1-201ENST00000563488 319 ntBASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 AL138918.1-201ENST00000568306 659 ntBASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 AP002472.1-201ENST00000577490 586 ntBASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 EML5-207ENST00000554922 9570 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 MROH4P-201ENST00000431302 1578 ntBASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 GALNT4-201ENST00000529983 5399 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 REXO1L1P-202ENST00000608646 1974 ntBASIC13.4□□□□□ -0.27
CHMP1AQ9HD42 FUT8-203ENST00000360689 5166 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.27
CHMP1AQ9HD42 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.27
CHMP1AQ9HD42 AGAP7P-201ENST00000582299 2062 ntBASIC13.4□□□□□ -0.27
CHMP1AQ9HD42 AGAP14-201ENST00000624701 2060 ntBASIC13.4□□□□□ -0.27
CHMP1AQ9HD42 FLNA-201ENST00000344736 7932 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.27
CHMP1AQ9HD42 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 FLII-221ENST00000578558 2377 ntTSL 5 BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 AL691432.1-201ENST00000596308 1422 ntBASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 C18orf15-201ENST00000623680 2534 ntBASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 TOR1AIP1-201ENST00000271583 3044 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 CBR1-202ENST00000399191 838 ntTSL 3 BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 PP14571-201ENST00000404327 934 ntTSL 2 BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 KRT18P2-201ENST00000447938 1258 ntBASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 AC009078.2-202ENST00000463353 338 ntBASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 RPL13AP23-201ENST00000480739 586 ntBASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 KRT126P-201ENST00000549467 1181 ntBASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 AC145285.3-201ENST00000564603 959 ntBASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 AL513190.1-201ENST00000621254 727 ntBASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 ZNF259P1-201ENST00000407656 1365 ntBASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 BNIP3P1-202ENST00000550043 1585 ntBASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 AC112693.3-201ENST00000624819 1983 ntBASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC13.39□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 56.7 ms