Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 AL022342.1-201ENST00000400363 863 ntBASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 COA5-202ENST00000409997 557 ntTSL 4 BASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 RBPMS2P1-201ENST00000437762 623 ntBASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 POLD2P1-201ENST00000511220 997 ntBASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 SLED1-202ENST00000512051 380 ntBASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 MIR3687-2-201ENST00000577708 61 ntBASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 AL121894.2-201ENST00000602977 491 ntBASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 AL133215.2-201ENST00000609242 977 ntBASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 MIR3687-1-201ENST00000614492 61 ntBASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 AC126335.2-201ENST00000623362 4637 ntBASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 CACNA1C-211ENST00000399617 7482 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 CDK12-201ENST00000430627 5918 ntAPPRIS ALT1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 EMC10-201ENST00000334976 9446 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 IMPDH1P4-201ENST00000445028 1534 ntBASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC54Q8NEL0 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 SRC-202ENST00000373558 4304 ntTSL 5 BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 CD81-202ENST00000381036 880 ntTSL 3 BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 AL133267.1-201ENST00000398220 340 ntBASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 AC004461.1-201ENST00000412461 403 ntBASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 TARDBPP1-201ENST00000442013 1203 ntBASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 USP40-206ENST00000443711 628 ntTSL 2 BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 NME4-207ENST00000450036 985 ntTSL 3 BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 HOTTIP_1.1-201ENST00000620415 57 ntBASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 AC009093.7-201ENST00000623853 1223 ntBASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC54Q8NEL0 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC13.53□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms