Protein–RNA interactions for Protein: P62068

USP46, Ubiquitin carboxyl-terminal hydrolase 46, humanhuman

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP46P62068 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.19
USP46P62068 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
USP46P62068 AMT-224ENST00000635808 1610 ntTSL 5 BASIC16.27■□□□□ 0.19
USP46P62068 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC16.26■□□□□ 0.19
USP46P62068 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
USP46P62068 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
USP46P62068 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
USP46P62068 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
USP46P62068 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
USP46P62068 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
USP46P62068 AC084364.1-201ENST00000551967 1556 ntBASIC16.26■□□□□ 0.19
USP46P62068 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC16.26■□□□□ 0.19
USP46P62068 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
USP46P62068 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
USP46P62068 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
USP46P62068 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
USP46P62068 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
USP46P62068 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
USP46P62068 BAATP1-201ENST00000412284 1225 ntBASIC16.26■□□□□ 0.19
USP46P62068 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
USP46P62068 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC16.26■□□□□ 0.19
USP46P62068 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC16.26■□□□□ 0.19
USP46P62068 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
USP46P62068 AC234783.1-201ENST00000441761 496 ntBASIC16.26■□□□□ 0.19
USP46P62068 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
USP46P62068 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC16.26■□□□□ 0.19
USP46P62068 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC16.26■□□□□ 0.19
USP46P62068 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
USP46P62068 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC16.26■□□□□ 0.19
USP46P62068 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC16.26■□□□□ 0.19
USP46P62068 AL355338.1-201ENST00000612598 913 ntTSL 2 BASIC16.26■□□□□ 0.19
USP46P62068 MIR6805-201ENST00000615055 62 ntBASIC16.26■□□□□ 0.19
USP46P62068 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
USP46P62068 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
USP46P62068 AL138799.1-201ENST00000448213 1675 ntBASIC16.26■□□□□ 0.19
USP46P62068 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
USP46P62068 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
USP46P62068 OVCH1-AS1-204ENST00000641955 5529 ntBASIC16.26■□□□□ 0.19
USP46P62068 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC16.26■□□□□ 0.19
USP46P62068 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
USP46P62068 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
USP46P62068 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
USP46P62068 TP73-213ENST00000604479 1623 ntTSL 5 BASIC16.26■□□□□ 0.19
USP46P62068 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
USP46P62068 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC16.26■□□□□ 0.19
USP46P62068 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
USP46P62068 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
USP46P62068 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC16.26■□□□□ 0.19
USP46P62068 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
USP46P62068 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
USP46P62068 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
USP46P62068 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
USP46P62068 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
USP46P62068 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
USP46P62068 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC16.25■□□□□ 0.19
USP46P62068 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
USP46P62068 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
USP46P62068 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC16.25■□□□□ 0.19
USP46P62068 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
USP46P62068 AC134312.5-201ENST00000568031 1313 ntBASIC16.25■□□□□ 0.19
USP46P62068 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
USP46P62068 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
USP46P62068 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
USP46P62068 SLC9A7P1-201ENST00000554295 3311 ntBASIC16.25■□□□□ 0.19
USP46P62068 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC16.25■□□□□ 0.19
USP46P62068 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
USP46P62068 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
USP46P62068 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
USP46P62068 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
USP46P62068 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
USP46P62068 AC012441.1-201ENST00000446669 685 ntBASIC16.25■□□□□ 0.19
USP46P62068 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
USP46P62068 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
USP46P62068 HNRNPA1P23-201ENST00000491091 1133 ntBASIC16.25■□□□□ 0.19
USP46P62068 AC106760.1-201ENST00000508690 800 ntBASIC16.25■□□□□ 0.19
USP46P62068 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC16.25■□□□□ 0.19
USP46P62068 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC16.25■□□□□ 0.19
USP46P62068 AC091489.1-201ENST00000563866 691 ntTSL 3 BASIC16.25■□□□□ 0.19
USP46P62068 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC16.25■□□□□ 0.19
USP46P62068 AC009486.1-201ENST00000569860 813 ntBASIC16.25■□□□□ 0.19
USP46P62068 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC16.25■□□□□ 0.19
USP46P62068 GPR39-203ENST00000622084 900 ntTSL 5 BASIC16.25■□□□□ 0.19
USP46P62068 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC16.25■□□□□ 0.19
USP46P62068 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
USP46P62068 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
USP46P62068 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
USP46P62068 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
USP46P62068 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
USP46P62068 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
USP46P62068 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
USP46P62068 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
USP46P62068 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
USP46P62068 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
USP46P62068 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
USP46P62068 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
USP46P62068 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
USP46P62068 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
USP46P62068 PDIA3P1-201ENST00000471856 1510 ntBASIC16.24■□□□□ 0.19
USP46P62068 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
USP46P62068 WARS-232ENST00000556645 2508 ntTSL 5 BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms