Protein–RNA interactions for Protein: P57078

RIPK4, Receptor-interacting serine/threonine-protein kinase 4, humanhuman

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK4P57078 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RIPK4P57078 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RIPK4P57078 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
RIPK4P57078 AC022532.1-201ENST00000624563 1728 ntBASIC20.13■□□□□ 0.81
RIPK4P57078 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RIPK4P57078 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC20.13■□□□□ 0.81
RIPK4P57078 AL136379.1-201ENST00000623471 2642 ntBASIC20.13■□□□□ 0.81
RIPK4P57078 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
RIPK4P57078 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
RIPK4P57078 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
RIPK4P57078 FES-204ENST00000414248 2327 ntTSL 2 BASIC20.13■□□□□ 0.81
RIPK4P57078 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RIPK4P57078 OR8S1-201ENST00000310194 1080 ntBASIC20.13■□□□□ 0.81
RIPK4P57078 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
RIPK4P57078 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC20.13■□□□□ 0.81
RIPK4P57078 AL645937.2-201ENST00000396808 931 ntBASIC20.13■□□□□ 0.81
RIPK4P57078 HIST1H2BPS3-201ENST00000419683 341 ntBASIC20.13■□□□□ 0.81
RIPK4P57078 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC20.13■□□□□ 0.81
RIPK4P57078 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC20.13■□□□□ 0.81
RIPK4P57078 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC20.13■□□□□ 0.81
RIPK4P57078 ACA64.2-201ENST00000459014 129 ntBASIC20.13■□□□□ 0.81
RIPK4P57078 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC20.13■□□□□ 0.81
RIPK4P57078 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC20.13■□□□□ 0.81
RIPK4P57078 RAB43P1-201ENST00000561790 589 ntBASIC20.13■□□□□ 0.81
RIPK4P57078 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC20.13■□□□□ 0.81
RIPK4P57078 ORC6-206ENST00000568364 888 ntTSL 5 BASIC20.13■□□□□ 0.81
RIPK4P57078 AL022328.1-201ENST00000610050 478 ntBASIC20.13■□□□□ 0.81
RIPK4P57078 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RIPK4P57078 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RIPK4P57078 REXO1L4P-201ENST00000605109 1937 ntBASIC20.13■□□□□ 0.81
RIPK4P57078 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC20.13■□□□□ 0.81
RIPK4P57078 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
RIPK4P57078 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
RIPK4P57078 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RIPK4P57078 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC20.13■□□□□ 0.81
RIPK4P57078 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
RIPK4P57078 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RIPK4P57078 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC20.13■□□□□ 0.81
RIPK4P57078 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
RIPK4P57078 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RIPK4P57078 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RIPK4P57078 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC20.12■□□□□ 0.81
RIPK4P57078 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RIPK4P57078 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RIPK4P57078 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
RIPK4P57078 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
RIPK4P57078 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC20.12■□□□□ 0.81
RIPK4P57078 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RIPK4P57078 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RIPK4P57078 AC092384.3-202ENST00000564646 2873 ntBASIC20.12■□□□□ 0.81
RIPK4P57078 AL139094.1-201ENST00000405549 1188 ntBASIC20.12■□□□□ 0.81
RIPK4P57078 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC20.12■□□□□ 0.81
RIPK4P57078 AL355864.2-201ENST00000447420 863 ntBASIC20.12■□□□□ 0.81
RIPK4P57078 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC20.12■□□□□ 0.81
RIPK4P57078 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
RIPK4P57078 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
RIPK4P57078 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC20.12■□□□□ 0.81
RIPK4P57078 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC20.12■□□□□ 0.81
RIPK4P57078 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC20.12■□□□□ 0.81
RIPK4P57078 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC20.12■□□□□ 0.81
RIPK4P57078 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RIPK4P57078 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
RIPK4P57078 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC20.12■□□□□ 0.81
RIPK4P57078 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
RIPK4P57078 REXO1L5P-201ENST00000622260 2098 ntBASIC20.12■□□□□ 0.81
RIPK4P57078 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
RIPK4P57078 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC20.12■□□□□ 0.81
RIPK4P57078 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RIPK4P57078 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC20.12■□□□□ 0.81
RIPK4P57078 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
RIPK4P57078 AL157414.3-201ENST00000624276 1954 ntBASIC20.12■□□□□ 0.81
RIPK4P57078 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC20.11■□□□□ 0.81
RIPK4P57078 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
RIPK4P57078 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC20.11■□□□□ 0.81
RIPK4P57078 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC20.11■□□□□ 0.81
RIPK4P57078 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
RIPK4P57078 AL109954.1-202ENST00000564051 2148 ntBASIC20.11■□□□□ 0.81
RIPK4P57078 KRT8P35-201ENST00000483942 1338 ntBASIC20.11■□□□□ 0.81
RIPK4P57078 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
RIPK4P57078 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RIPK4P57078 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RIPK4P57078 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RIPK4P57078 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RIPK4P57078 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
RIPK4P57078 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
RIPK4P57078 ARSEP1-201ENST00000420443 635 ntBASIC20.11■□□□□ 0.81
RIPK4P57078 GPR53P-205ENST00000457298 1084 ntBASIC20.11■□□□□ 0.81
RIPK4P57078 KRT18P25-201ENST00000508931 1278 ntBASIC20.11■□□□□ 0.81
RIPK4P57078 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC20.11■□□□□ 0.81
RIPK4P57078 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
RIPK4P57078 GNRHR2-203ENST00000581100 1187 ntBASIC20.11■□□□□ 0.81
RIPK4P57078 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC20.11■□□□□ 0.81
RIPK4P57078 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
RIPK4P57078 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RIPK4P57078 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC20.11■□□□□ 0.81
RIPK4P57078 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
RIPK4P57078 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RIPK4P57078 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC20.11■□□□□ 0.81
RIPK4P57078 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
RIPK4P57078 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms