Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
DEPDC4Q8N2C3 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC14.52□□□□□ -0.09
DEPDC4Q8N2C3 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
DEPDC4Q8N2C3 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
DEPDC4Q8N2C3 STK33-217ENST00000534493 1895 ntTSL 2 BASIC14.52□□□□□ -0.09
DEPDC4Q8N2C3 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC14.52□□□□□ -0.09
DEPDC4Q8N2C3 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
DEPDC4Q8N2C3 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
DEPDC4Q8N2C3 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
DEPDC4Q8N2C3 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
DEPDC4Q8N2C3 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
DEPDC4Q8N2C3 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
DEPDC4Q8N2C3 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.09
DEPDC4Q8N2C3 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
DEPDC4Q8N2C3 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
DEPDC4Q8N2C3 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
DEPDC4Q8N2C3 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
DEPDC4Q8N2C3 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC14.51□□□□□ -0.09
DEPDC4Q8N2C3 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
DEPDC4Q8N2C3 AC126335.2-201ENST00000623362 4637 ntBASIC14.51□□□□□ -0.09
DEPDC4Q8N2C3 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
DEPDC4Q8N2C3 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
DEPDC4Q8N2C3 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
DEPDC4Q8N2C3 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
DEPDC4Q8N2C3 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
DEPDC4Q8N2C3 THSD4-201ENST00000261862 3133 ntTSL 5 BASIC14.51□□□□□ -0.09
DEPDC4Q8N2C3 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
DEPDC4Q8N2C3 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
DEPDC4Q8N2C3 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
DEPDC4Q8N2C3 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
DEPDC4Q8N2C3 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
DEPDC4Q8N2C3 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC14.51□□□□□ -0.09
DEPDC4Q8N2C3 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
DEPDC4Q8N2C3 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
DEPDC4Q8N2C3 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC14.51□□□□□ -0.09
DEPDC4Q8N2C3 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC14.51□□□□□ -0.09
DEPDC4Q8N2C3 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
DEPDC4Q8N2C3 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
DEPDC4Q8N2C3 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
DEPDC4Q8N2C3 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
DEPDC4Q8N2C3 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC14.51□□□□□ -0.09
DEPDC4Q8N2C3 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC14.51□□□□□ -0.09
DEPDC4Q8N2C3 IGHV3-62-201ENST00000520057 340 ntBASIC14.51□□□□□ -0.09
DEPDC4Q8N2C3 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC14.51□□□□□ -0.09
DEPDC4Q8N2C3 AC027796.2-201ENST00000575326 344 ntBASIC14.51□□□□□ -0.09
DEPDC4Q8N2C3 AL009183.1-201ENST00000603760 355 ntBASIC14.51□□□□□ -0.09
DEPDC4Q8N2C3 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC14.51□□□□□ -0.09
DEPDC4Q8N2C3 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
DEPDC4Q8N2C3 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
DEPDC4Q8N2C3 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
DEPDC4Q8N2C3 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
DEPDC4Q8N2C3 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC14.51□□□□□ -0.09
DEPDC4Q8N2C3 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
DEPDC4Q8N2C3 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
DEPDC4Q8N2C3 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
DEPDC4Q8N2C3 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
DEPDC4Q8N2C3 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC14.51□□□□□ -0.09
DEPDC4Q8N2C3 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
DEPDC4Q8N2C3 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC14.51□□□□□ -0.09
DEPDC4Q8N2C3 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
DEPDC4Q8N2C3 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
DEPDC4Q8N2C3 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC14.51□□□□□ -0.09
DEPDC4Q8N2C3 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
DEPDC4Q8N2C3 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
DEPDC4Q8N2C3 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
DEPDC4Q8N2C3 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC14.5□□□□□ -0.09
DEPDC4Q8N2C3 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC14.5□□□□□ -0.09
DEPDC4Q8N2C3 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC14.5□□□□□ -0.09
DEPDC4Q8N2C3 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
DEPDC4Q8N2C3 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
DEPDC4Q8N2C3 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
DEPDC4Q8N2C3 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
DEPDC4Q8N2C3 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
DEPDC4Q8N2C3 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
DEPDC4Q8N2C3 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
DEPDC4Q8N2C3 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC14.5□□□□□ -0.09
DEPDC4Q8N2C3 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
DEPDC4Q8N2C3 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
DEPDC4Q8N2C3 AJ011931.1-201ENST00000618749 2492 ntBASIC14.5□□□□□ -0.09
DEPDC4Q8N2C3 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC14.5□□□□□ -0.09
DEPDC4Q8N2C3 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC14.5□□□□□ -0.09
DEPDC4Q8N2C3 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
DEPDC4Q8N2C3 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
DEPDC4Q8N2C3 TFAMP1-201ENST00000412727 736 ntBASIC14.5□□□□□ -0.09
DEPDC4Q8N2C3 AL355306.1-201ENST00000415580 579 ntBASIC14.5□□□□□ -0.09
DEPDC4Q8N2C3 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC14.5□□□□□ -0.09
DEPDC4Q8N2C3 AC005237.2-201ENST00000434368 219 ntBASIC14.5□□□□□ -0.09
DEPDC4Q8N2C3 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
DEPDC4Q8N2C3 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
DEPDC4Q8N2C3 AL158825.2-201ENST00000455336 670 ntTSL 5 BASIC14.5□□□□□ -0.09
DEPDC4Q8N2C3 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC14.5□□□□□ -0.09
DEPDC4Q8N2C3 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
DEPDC4Q8N2C3 AC243562.2-201ENST00000561247 970 ntBASIC14.5□□□□□ -0.09
DEPDC4Q8N2C3 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC14.5□□□□□ -0.09
DEPDC4Q8N2C3 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC14.5□□□□□ -0.09
DEPDC4Q8N2C3 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC14.5□□□□□ -0.09
DEPDC4Q8N2C3 METTL23-205ENST00000588302 925 ntTSL 5 BASIC14.5□□□□□ -0.09
DEPDC4Q8N2C3 AL513210.1-201ENST00000629608 234 ntBASIC14.5□□□□□ -0.09
DEPDC4Q8N2C3 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
DEPDC4Q8N2C3 AC023024.2-201ENST00000623561 1993 ntBASIC14.5□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms