Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RHBDL3P58872 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RHBDL3P58872 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RHBDL3P58872 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
RHBDL3P58872 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RHBDL3P58872 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC18.04■□□□□ 0.48
RHBDL3P58872 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
RHBDL3P58872 STRN-202ENST00000379213 2254 ntTSL 5 BASIC18.04■□□□□ 0.48
RHBDL3P58872 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RHBDL3P58872 INE2-201ENST00000630399 1874 ntBASIC18.04■□□□□ 0.48
RHBDL3P58872 AC012508.2-201ENST00000567613 1472 ntBASIC18.04■□□□□ 0.48
RHBDL3P58872 AC004945.1-201ENST00000416738 983 ntBASIC18.04■□□□□ 0.48
RHBDL3P58872 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC18.04■□□□□ 0.48
RHBDL3P58872 AKR7A2P1-201ENST00000460134 915 ntBASIC18.04■□□□□ 0.48
RHBDL3P58872 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
RHBDL3P58872 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC18.04■□□□□ 0.48
RHBDL3P58872 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC18.04■□□□□ 0.48
RHBDL3P58872 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC18.04■□□□□ 0.48
RHBDL3P58872 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC18.04■□□□□ 0.48
RHBDL3P58872 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC18.04■□□□□ 0.48
RHBDL3P58872 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
RHBDL3P58872 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC18.04■□□□□ 0.48
RHBDL3P58872 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC18.04■□□□□ 0.48
RHBDL3P58872 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
RHBDL3P58872 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
RHBDL3P58872 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
RHBDL3P58872 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC18.03■□□□□ 0.48
RHBDL3P58872 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC18.03■□□□□ 0.48
RHBDL3P58872 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
RHBDL3P58872 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RHBDL3P58872 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RHBDL3P58872 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
RHBDL3P58872 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC18.03■□□□□ 0.48
RHBDL3P58872 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
RHBDL3P58872 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC18.03■□□□□ 0.48
RHBDL3P58872 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC18.03■□□□□ 0.48
RHBDL3P58872 HNRNPA1P32-201ENST00000396326 963 ntBASIC18.03■□□□□ 0.48
RHBDL3P58872 HNRNPA1P63-201ENST00000427917 963 ntBASIC18.03■□□□□ 0.48
RHBDL3P58872 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC18.03■□□□□ 0.48
RHBDL3P58872 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC18.03■□□□□ 0.48
RHBDL3P58872 PTPA-218ENST00000435132 618 ntTSL 2 BASIC18.03■□□□□ 0.48
RHBDL3P58872 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
RHBDL3P58872 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC18.03■□□□□ 0.48
RHBDL3P58872 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
RHBDL3P58872 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC18.03■□□□□ 0.48
RHBDL3P58872 AC005730.2-201ENST00000564549 1184 ntBASIC18.03■□□□□ 0.48
RHBDL3P58872 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RHBDL3P58872 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC18.03■□□□□ 0.48
RHBDL3P58872 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC18.03■□□□□ 0.48
RHBDL3P58872 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
RHBDL3P58872 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RHBDL3P58872 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
RHBDL3P58872 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
RHBDL3P58872 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
RHBDL3P58872 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
RHBDL3P58872 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
RHBDL3P58872 FKBP4P6-201ENST00000457486 1332 ntBASIC18.02■□□□□ 0.48
RHBDL3P58872 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC18.02■□□□□ 0.48
RHBDL3P58872 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
RHBDL3P58872 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
RHBDL3P58872 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
RHBDL3P58872 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RHBDL3P58872 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
RHBDL3P58872 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC18.02■□□□□ 0.48
RHBDL3P58872 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RHBDL3P58872 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC18.02■□□□□ 0.48
RHBDL3P58872 AC126915.1-201ENST00000522847 1038 ntBASIC18.02■□□□□ 0.48
RHBDL3P58872 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC18.02■□□□□ 0.48
RHBDL3P58872 MIR4683-201ENST00000579659 81 ntBASIC18.02■□□□□ 0.48
RHBDL3P58872 MIR4783-201ENST00000580343 82 ntBASIC18.02■□□□□ 0.48
RHBDL3P58872 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC18.02■□□□□ 0.48
RHBDL3P58872 AL451050.2-201ENST00000606967 682 ntBASIC18.02■□□□□ 0.48
RHBDL3P58872 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC18.02■□□□□ 0.48
RHBDL3P58872 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RHBDL3P58872 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
RHBDL3P58872 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
RHBDL3P58872 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
RHBDL3P58872 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC18.02■□□□□ 0.47
RHBDL3P58872 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC18.02■□□□□ 0.47
RHBDL3P58872 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
RHBDL3P58872 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC18.02■□□□□ 0.47
RHBDL3P58872 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
RHBDL3P58872 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC18.02■□□□□ 0.47
RHBDL3P58872 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC18.02■□□□□ 0.47
RHBDL3P58872 AC009093.2-202ENST00000620513 2079 ntBASIC18.02■□□□□ 0.47
RHBDL3P58872 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC18.02■□□□□ 0.47
RHBDL3P58872 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.47
RHBDL3P58872 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC18.01■□□□□ 0.47
RHBDL3P58872 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC18.01■□□□□ 0.47
RHBDL3P58872 AC138028.6-201ENST00000616106 1482 ntBASIC18.01■□□□□ 0.47
RHBDL3P58872 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC18.01■□□□□ 0.47
RHBDL3P58872 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC18.01■□□□□ 0.47
RHBDL3P58872 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RHBDL3P58872 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RHBDL3P58872 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
RHBDL3P58872 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
RHBDL3P58872 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC18.01■□□□□ 0.47
RHBDL3P58872 AP000845.1-201ENST00000581677 2131 ntBASIC18.01■□□□□ 0.47
RHBDL3P58872 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RHBDL3P58872 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 67.4 ms