Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC17.66■□□□□ 0.42
HMGCS2P54868 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC17.66■□□□□ 0.42
HMGCS2P54868 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC17.66■□□□□ 0.42
HMGCS2P54868 AP001505.2-201ENST00000616815 443 ntBASIC17.66■□□□□ 0.42
HMGCS2P54868 AL603764.1-201ENST00000636452 321 ntBASIC17.66■□□□□ 0.42
HMGCS2P54868 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HMGCS2P54868 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HMGCS2P54868 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
HMGCS2P54868 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HMGCS2P54868 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
HMGCS2P54868 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
HMGCS2P54868 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
HMGCS2P54868 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HMGCS2P54868 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
HMGCS2P54868 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
HMGCS2P54868 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
HMGCS2P54868 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HMGCS2P54868 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HMGCS2P54868 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC17.65■□□□□ 0.42
HMGCS2P54868 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
HMGCS2P54868 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
HMGCS2P54868 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC17.65■□□□□ 0.42
HMGCS2P54868 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HMGCS2P54868 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC17.65■□□□□ 0.42
HMGCS2P54868 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC17.65■□□□□ 0.42
HMGCS2P54868 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HMGCS2P54868 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
HMGCS2P54868 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC17.65■□□□□ 0.42
HMGCS2P54868 LTB4R2-202ENST00000528054 3092 ntBASIC17.65■□□□□ 0.42
HMGCS2P54868 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HMGCS2P54868 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HMGCS2P54868 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
HMGCS2P54868 MIR769-201ENST00000390225 118 ntBASIC17.65■□□□□ 0.42
HMGCS2P54868 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HMGCS2P54868 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC17.65■□□□□ 0.42
HMGCS2P54868 RN7SL769P-201ENST00000469386 295 ntBASIC17.65■□□□□ 0.42
HMGCS2P54868 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC17.65■□□□□ 0.42
HMGCS2P54868 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HMGCS2P54868 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HMGCS2P54868 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC17.65■□□□□ 0.42
HMGCS2P54868 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC17.65■□□□□ 0.42
HMGCS2P54868 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HMGCS2P54868 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HMGCS2P54868 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC17.65■□□□□ 0.42
HMGCS2P54868 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HMGCS2P54868 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HMGCS2P54868 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HMGCS2P54868 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC17.65■□□□□ 0.42
HMGCS2P54868 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HMGCS2P54868 PRAL-201ENST00000624952 3286 ntBASIC17.65■□□□□ 0.42
HMGCS2P54868 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HMGCS2P54868 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC17.65■□□□□ 0.42
HMGCS2P54868 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HMGCS2P54868 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HMGCS2P54868 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HMGCS2P54868 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
HMGCS2P54868 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC17.64■□□□□ 0.42
HMGCS2P54868 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
HMGCS2P54868 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
HMGCS2P54868 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC17.64■□□□□ 0.41
HMGCS2P54868 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HMGCS2P54868 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
HMGCS2P54868 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
HMGCS2P54868 KRT8P19-201ENST00000551916 1455 ntBASIC17.64■□□□□ 0.41
HMGCS2P54868 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
HMGCS2P54868 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
HMGCS2P54868 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HMGCS2P54868 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HMGCS2P54868 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.41
HMGCS2P54868 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC17.64■□□□□ 0.41
HMGCS2P54868 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC17.64■□□□□ 0.41
HMGCS2P54868 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HMGCS2P54868 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC17.64■□□□□ 0.41
HMGCS2P54868 AC021723.1-201ENST00000486306 515 ntBASIC17.64■□□□□ 0.41
HMGCS2P54868 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HMGCS2P54868 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC17.64■□□□□ 0.41
HMGCS2P54868 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC17.64■□□□□ 0.41
HMGCS2P54868 DUX4L47-201ENST00000566374 394 ntBASIC17.64■□□□□ 0.41
HMGCS2P54868 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC17.64■□□□□ 0.41
HMGCS2P54868 HCG18-245ENST00000602550 559 ntTSL 4 BASIC17.64■□□□□ 0.41
HMGCS2P54868 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC17.64■□□□□ 0.41
HMGCS2P54868 AC091812.3-201ENST00000621362 345 ntBASIC17.64■□□□□ 0.41
HMGCS2P54868 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HMGCS2P54868 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HMGCS2P54868 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC17.64■□□□□ 0.41
HMGCS2P54868 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HMGCS2P54868 AL157414.3-201ENST00000624276 1954 ntBASIC17.64■□□□□ 0.41
HMGCS2P54868 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC17.64■□□□□ 0.41
HMGCS2P54868 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC17.64■□□□□ 0.41
HMGCS2P54868 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC17.64■□□□□ 0.41
HMGCS2P54868 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC17.64■□□□□ 0.41
HMGCS2P54868 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HMGCS2P54868 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC17.64■□□□□ 0.41
HMGCS2P54868 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HMGCS2P54868 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC17.63■□□□□ 0.41
HMGCS2P54868 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC17.63■□□□□ 0.41
HMGCS2P54868 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
HMGCS2P54868 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HMGCS2P54868 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HMGCS2P54868 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms