Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC17.62■□□□□ 0.41
SMARCA1P28370 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC17.62■□□□□ 0.41
SMARCA1P28370 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC17.62■□□□□ 0.41
SMARCA1P28370 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC17.62■□□□□ 0.41
SMARCA1P28370 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC17.62■□□□□ 0.41
SMARCA1P28370 AP000812.2-201ENST00000538934 718 ntBASIC17.62■□□□□ 0.41
SMARCA1P28370 RAB43P1-201ENST00000561790 589 ntBASIC17.62■□□□□ 0.41
SMARCA1P28370 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC17.62■□□□□ 0.41
SMARCA1P28370 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC17.62■□□□□ 0.41
SMARCA1P28370 AL512343.1-201ENST00000605837 169 ntBASIC17.62■□□□□ 0.41
SMARCA1P28370 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC17.62■□□□□ 0.41
SMARCA1P28370 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SMARCA1P28370 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SMARCA1P28370 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SMARCA1P28370 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
SMARCA1P28370 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC17.62■□□□□ 0.41
SMARCA1P28370 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC17.62■□□□□ 0.41
SMARCA1P28370 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SMARCA1P28370 LRRC59-203ENST00000576448 1531 ntBASIC17.62■□□□□ 0.41
SMARCA1P28370 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
SMARCA1P28370 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
SMARCA1P28370 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC17.62■□□□□ 0.41
SMARCA1P28370 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC17.62■□□□□ 0.41
SMARCA1P28370 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
SMARCA1P28370 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
SMARCA1P28370 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
SMARCA1P28370 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC17.61■□□□□ 0.41
SMARCA1P28370 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
SMARCA1P28370 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC17.61■□□□□ 0.41
SMARCA1P28370 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC17.61■□□□□ 0.41
SMARCA1P28370 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
SMARCA1P28370 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SMARCA1P28370 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SMARCA1P28370 AC023157.3-201ENST00000619086 2088 ntBASIC17.61■□□□□ 0.41
SMARCA1P28370 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SMARCA1P28370 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
SMARCA1P28370 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
SMARCA1P28370 ARSEP1-201ENST00000420443 635 ntBASIC17.61■□□□□ 0.41
SMARCA1P28370 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC17.61■□□□□ 0.41
SMARCA1P28370 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SMARCA1P28370 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC17.61■□□□□ 0.41
SMARCA1P28370 GPR53P-205ENST00000457298 1084 ntBASIC17.61■□□□□ 0.41
SMARCA1P28370 AC007551.1-201ENST00000457394 519 ntBASIC17.61■□□□□ 0.41
SMARCA1P28370 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC17.61■□□□□ 0.41
SMARCA1P28370 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SMARCA1P28370 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC17.61■□□□□ 0.41
SMARCA1P28370 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC17.61■□□□□ 0.41
SMARCA1P28370 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC17.61■□□□□ 0.41
SMARCA1P28370 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC17.61■□□□□ 0.41
SMARCA1P28370 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SMARCA1P28370 LILRP1-201ENST00000444199 1370 ntBASIC17.61■□□□□ 0.41
SMARCA1P28370 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SMARCA1P28370 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SMARCA1P28370 PARN-202ENST00000420015 2360 ntTSL 2 BASIC17.61■□□□□ 0.41
SMARCA1P28370 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC17.61■□□□□ 0.41
SMARCA1P28370 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SMARCA1P28370 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
SMARCA1P28370 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SMARCA1P28370 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SMARCA1P28370 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
SMARCA1P28370 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SMARCA1P28370 ZBED1P1-201ENST00000502364 1930 ntBASIC17.6■□□□□ 0.41
SMARCA1P28370 PCDHGB8P-201ENST00000502926 1973 ntBASIC17.6■□□□□ 0.41
SMARCA1P28370 REXO1L2P-201ENST00000425429 2069 ntBASIC17.6■□□□□ 0.41
SMARCA1P28370 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SMARCA1P28370 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SMARCA1P28370 FES-204ENST00000414248 2327 ntTSL 2 BASIC17.6■□□□□ 0.41
SMARCA1P28370 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC17.6■□□□□ 0.41
SMARCA1P28370 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
SMARCA1P28370 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SMARCA1P28370 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SMARCA1P28370 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SMARCA1P28370 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SMARCA1P28370 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
SMARCA1P28370 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SMARCA1P28370 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
SMARCA1P28370 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SMARCA1P28370 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
SMARCA1P28370 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC17.6■□□□□ 0.41
SMARCA1P28370 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SMARCA1P28370 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC17.6■□□□□ 0.41
SMARCA1P28370 GZMB-202ENST00000382540 816 ntTSL 5 BASIC17.6■□□□□ 0.41
SMARCA1P28370 CD8B2-202ENST00000417670 633 ntBASIC17.6■□□□□ 0.41
SMARCA1P28370 ACA64.2-201ENST00000459014 129 ntBASIC17.6■□□□□ 0.41
SMARCA1P28370 FTH1P14-201ENST00000482930 551 ntBASIC17.6■□□□□ 0.41
SMARCA1P28370 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC17.6■□□□□ 0.41
SMARCA1P28370 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SMARCA1P28370 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC17.6■□□□□ 0.41
SMARCA1P28370 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
SMARCA1P28370 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC17.6■□□□□ 0.41
SMARCA1P28370 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
SMARCA1P28370 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SMARCA1P28370 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SMARCA1P28370 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SMARCA1P28370 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
SMARCA1P28370 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC17.6■□□□□ 0.41
SMARCA1P28370 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SMARCA1P28370 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC17.6■□□□□ 0.41
SMARCA1P28370 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC17.6■□□□□ 0.41
SMARCA1P28370 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms