Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC18.03■□□□□ 0.48
CCDC39Q9UFE4 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC39Q9UFE4 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC39Q9UFE4 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC39Q9UFE4 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC39Q9UFE4 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC18.03■□□□□ 0.48
CCDC39Q9UFE4 RPP21-221ENST00000428040 594 ntTSL 2 BASIC18.03■□□□□ 0.48
CCDC39Q9UFE4 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC39Q9UFE4 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC39Q9UFE4 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC18.03■□□□□ 0.48
CCDC39Q9UFE4 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC18.03■□□□□ 0.48
CCDC39Q9UFE4 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC39Q9UFE4 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC39Q9UFE4 AC093520.2-201ENST00000561830 333 ntBASIC18.03■□□□□ 0.48
CCDC39Q9UFE4 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC39Q9UFE4 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC18.03■□□□□ 0.48
CCDC39Q9UFE4 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC39Q9UFE4 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC18.03■□□□□ 0.48
CCDC39Q9UFE4 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC39Q9UFE4 OS9-207ENST00000439210 1946 ntTSL 2 BASIC18.03■□□□□ 0.48
CCDC39Q9UFE4 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC18.03■□□□□ 0.48
CCDC39Q9UFE4 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC39Q9UFE4 CYP4F24P-201ENST00000586049 1580 ntBASIC18.03■□□□□ 0.48
CCDC39Q9UFE4 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC39Q9UFE4 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC39Q9UFE4 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC18.03■□□□□ 0.48
CCDC39Q9UFE4 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC39Q9UFE4 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC18.03■□□□□ 0.48
CCDC39Q9UFE4 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
CCDC39Q9UFE4 ZEB1-AS1-208ENST00000607166 2503 ntBASIC18.03■□□□□ 0.48
CCDC39Q9UFE4 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC39Q9UFE4 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC39Q9UFE4 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC39Q9UFE4 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC39Q9UFE4 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC39Q9UFE4 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC39Q9UFE4 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC18.02■□□□□ 0.48
CCDC39Q9UFE4 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
CCDC39Q9UFE4 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC18.02■□□□□ 0.48
CCDC39Q9UFE4 AC117489.1-201ENST00000625169 3217 ntBASIC18.02■□□□□ 0.48
CCDC39Q9UFE4 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
CCDC39Q9UFE4 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC18.02■□□□□ 0.48
CCDC39Q9UFE4 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC39Q9UFE4 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC18.02■□□□□ 0.48
CCDC39Q9UFE4 AC148477.4-201ENST00000613430 1793 ntBASIC18.02■□□□□ 0.48
CCDC39Q9UFE4 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC39Q9UFE4 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
CCDC39Q9UFE4 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC39Q9UFE4 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC18.02■□□□□ 0.48
CCDC39Q9UFE4 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC18.02■□□□□ 0.48
CCDC39Q9UFE4 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC39Q9UFE4 RBPMS2P1-201ENST00000437762 623 ntBASIC18.02■□□□□ 0.48
CCDC39Q9UFE4 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC18.02■□□□□ 0.48
CCDC39Q9UFE4 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC18.02■□□□□ 0.48
CCDC39Q9UFE4 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC18.02■□□□□ 0.48
CCDC39Q9UFE4 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC18.02■□□□□ 0.48
CCDC39Q9UFE4 GATD1-206ENST00000526325 756 ntTSL 5 BASIC18.02■□□□□ 0.48
CCDC39Q9UFE4 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC18.02■□□□□ 0.48
CCDC39Q9UFE4 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC18.02■□□□□ 0.48
CCDC39Q9UFE4 CALM1-205ENST00000553542 877 ntTSL 5 BASIC18.02■□□□□ 0.48
CCDC39Q9UFE4 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC18.02■□□□□ 0.48
CCDC39Q9UFE4 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC18.02■□□□□ 0.48
CCDC39Q9UFE4 AC018529.1-201ENST00000613063 361 ntBASIC18.02■□□□□ 0.48
CCDC39Q9UFE4 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC18.02■□□□□ 0.48
CCDC39Q9UFE4 ABR-228ENST00000574437 3196 ntTSL 5 BASIC18.02■□□□□ 0.48
CCDC39Q9UFE4 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CCDC39Q9UFE4 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.47
CCDC39Q9UFE4 REXO1L1P-202ENST00000608646 1974 ntBASIC18.02■□□□□ 0.47
CCDC39Q9UFE4 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CCDC39Q9UFE4 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CCDC39Q9UFE4 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CCDC39Q9UFE4 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC18.02■□□□□ 0.47
CCDC39Q9UFE4 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
CCDC39Q9UFE4 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
CCDC39Q9UFE4 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC18.02■□□□□ 0.47
CCDC39Q9UFE4 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CCDC39Q9UFE4 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CCDC39Q9UFE4 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CCDC39Q9UFE4 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CCDC39Q9UFE4 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC39Q9UFE4 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
CCDC39Q9UFE4 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
CCDC39Q9UFE4 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC39Q9UFE4 AC006504.5-208ENST00000588784 2401 ntBASIC18.01■□□□□ 0.47
CCDC39Q9UFE4 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
CCDC39Q9UFE4 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC18.01■□□□□ 0.47
CCDC39Q9UFE4 LRRFIP1P1-201ENST00000498774 2246 ntBASIC18.01■□□□□ 0.47
CCDC39Q9UFE4 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC18.01■□□□□ 0.47
CCDC39Q9UFE4 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC18.01■□□□□ 0.47
CCDC39Q9UFE4 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
CCDC39Q9UFE4 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC18.01■□□□□ 0.47
CCDC39Q9UFE4 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC39Q9UFE4 AC254562.1-201ENST00000417586 456 ntBASIC18.01■□□□□ 0.47
CCDC39Q9UFE4 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC18.01■□□□□ 0.47
CCDC39Q9UFE4 CCDC74BP1-201ENST00000508880 1123 ntBASIC18.01■□□□□ 0.47
CCDC39Q9UFE4 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC18.01■□□□□ 0.47
CCDC39Q9UFE4 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC18.01■□□□□ 0.47
CCDC39Q9UFE4 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
CCDC39Q9UFE4 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC39Q9UFE4 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms