Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SMC4Q9NTJ3 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SMC4Q9NTJ3 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SMC4Q9NTJ3 AL596257.1-201ENST00000641463 2694 ntBASIC19.87■□□□□ 0.77
SMC4Q9NTJ3 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SMC4Q9NTJ3 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SMC4Q9NTJ3 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SMC4Q9NTJ3 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
SMC4Q9NTJ3 TCAF2P1-201ENST00000291129 2421 ntBASIC19.86■□□□□ 0.77
SMC4Q9NTJ3 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC19.86■□□□□ 0.77
SMC4Q9NTJ3 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
SMC4Q9NTJ3 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
SMC4Q9NTJ3 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC19.86■□□□□ 0.77
SMC4Q9NTJ3 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SMC4Q9NTJ3 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SMC4Q9NTJ3 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
SMC4Q9NTJ3 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC19.86■□□□□ 0.77
SMC4Q9NTJ3 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SMC4Q9NTJ3 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC19.86■□□□□ 0.77
SMC4Q9NTJ3 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
SMC4Q9NTJ3 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
SMC4Q9NTJ3 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC19.86■□□□□ 0.77
SMC4Q9NTJ3 DFFBP1-201ENST00000433250 979 ntBASIC19.86■□□□□ 0.77
SMC4Q9NTJ3 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC19.86■□□□□ 0.77
SMC4Q9NTJ3 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC19.86■□□□□ 0.77
SMC4Q9NTJ3 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC19.86■□□□□ 0.77
SMC4Q9NTJ3 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SMC4Q9NTJ3 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC19.86■□□□□ 0.77
SMC4Q9NTJ3 AL049840.4-201ENST00000602422 811 ntBASIC19.86■□□□□ 0.77
SMC4Q9NTJ3 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC19.86■□□□□ 0.77
SMC4Q9NTJ3 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC19.86■□□□□ 0.77
SMC4Q9NTJ3 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SMC4Q9NTJ3 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SMC4Q9NTJ3 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SMC4Q9NTJ3 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SMC4Q9NTJ3 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC19.86■□□□□ 0.77
SMC4Q9NTJ3 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC19.86■□□□□ 0.77
SMC4Q9NTJ3 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SMC4Q9NTJ3 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
SMC4Q9NTJ3 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
SMC4Q9NTJ3 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC19.85■□□□□ 0.77
SMC4Q9NTJ3 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC19.85■□□□□ 0.77
SMC4Q9NTJ3 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SMC4Q9NTJ3 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
SMC4Q9NTJ3 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC19.85■□□□□ 0.77
SMC4Q9NTJ3 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SMC4Q9NTJ3 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SMC4Q9NTJ3 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SMC4Q9NTJ3 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC19.85■□□□□ 0.77
SMC4Q9NTJ3 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC19.85■□□□□ 0.77
SMC4Q9NTJ3 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC19.85■□□□□ 0.77
SMC4Q9NTJ3 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SMC4Q9NTJ3 GOLGA6L11P-201ENST00000417252 1298 ntBASIC19.85■□□□□ 0.77
SMC4Q9NTJ3 GHSR-202ENST00000427970 912 ntBASIC19.85■□□□□ 0.77
SMC4Q9NTJ3 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
SMC4Q9NTJ3 OARD1-208ENST00000469104 704 ntTSL 2 BASIC19.85■□□□□ 0.77
SMC4Q9NTJ3 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC19.85■□□□□ 0.77
SMC4Q9NTJ3 RRP7BP-205ENST00000566851 833 ntBASIC19.85■□□□□ 0.77
SMC4Q9NTJ3 AC099568.2-201ENST00000609194 695 ntBASIC19.85■□□□□ 0.77
SMC4Q9NTJ3 AL662799.1-202ENST00000614205 422 ntBASIC19.85■□□□□ 0.77
SMC4Q9NTJ3 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC19.85■□□□□ 0.77
SMC4Q9NTJ3 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC19.85■□□□□ 0.77
SMC4Q9NTJ3 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC19.85■□□□□ 0.77
SMC4Q9NTJ3 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC19.85■□□□□ 0.77
SMC4Q9NTJ3 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC19.85■□□□□ 0.77
SMC4Q9NTJ3 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SMC4Q9NTJ3 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SMC4Q9NTJ3 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SMC4Q9NTJ3 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC19.85■□□□□ 0.77
SMC4Q9NTJ3 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC19.85■□□□□ 0.77
SMC4Q9NTJ3 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC19.85■□□□□ 0.77
SMC4Q9NTJ3 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SMC4Q9NTJ3 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SMC4Q9NTJ3 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SMC4Q9NTJ3 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SMC4Q9NTJ3 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SMC4Q9NTJ3 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SMC4Q9NTJ3 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
SMC4Q9NTJ3 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
SMC4Q9NTJ3 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SMC4Q9NTJ3 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
SMC4Q9NTJ3 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SMC4Q9NTJ3 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SMC4Q9NTJ3 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC19.84■□□□□ 0.77
SMC4Q9NTJ3 VDAC1P7-201ENST00000462417 847 ntBASIC19.84■□□□□ 0.77
SMC4Q9NTJ3 FADS2-205ENST00000517839 469 ntTSL 3 BASIC19.84■□□□□ 0.77
SMC4Q9NTJ3 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC19.84■□□□□ 0.77
SMC4Q9NTJ3 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
SMC4Q9NTJ3 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC19.84■□□□□ 0.77
SMC4Q9NTJ3 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
SMC4Q9NTJ3 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SMC4Q9NTJ3 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC19.84■□□□□ 0.77
SMC4Q9NTJ3 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC19.84■□□□□ 0.77
SMC4Q9NTJ3 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SMC4Q9NTJ3 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
SMC4Q9NTJ3 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SMC4Q9NTJ3 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC19.84■□□□□ 0.77
SMC4Q9NTJ3 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SMC4Q9NTJ3 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SMC4Q9NTJ3 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms