Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM4Q9C037 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC15.66■□□□□ 0.1
TRIM4Q9C037 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM4Q9C037 LHX1-201ENST00000614239 3425 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM4Q9C037 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM4Q9C037 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
TRIM4Q9C037 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
TRIM4Q9C037 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM4Q9C037 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
TRIM4Q9C037 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
TRIM4Q9C037 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM4Q9C037 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC15.65■□□□□ 0.1
TRIM4Q9C037 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM4Q9C037 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC15.65■□□□□ 0.1
TRIM4Q9C037 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC15.65■□□□□ 0.1
TRIM4Q9C037 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM4Q9C037 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
TRIM4Q9C037 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM4Q9C037 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM4Q9C037 AC010327.5-201ENST00000586923 3061 ntBASIC15.65■□□□□ 0.1
TRIM4Q9C037 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC15.65■□□□□ 0.1
TRIM4Q9C037 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC15.65■□□□□ 0.1
TRIM4Q9C037 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM4Q9C037 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM4Q9C037 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM4Q9C037 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
TRIM4Q9C037 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC15.65■□□□□ 0.1
TRIM4Q9C037 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
TRIM4Q9C037 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM4Q9C037 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM4Q9C037 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC15.65■□□□□ 0.1
TRIM4Q9C037 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM4Q9C037 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC15.65■□□□□ 0.1
TRIM4Q9C037 HILS1-202ENST00000545329 423 ntBASIC15.65■□□□□ 0.1
TRIM4Q9C037 TSFM-210ENST00000550559 897 ntTSL 5 BASIC15.65■□□□□ 0.1
TRIM4Q9C037 AC140878.1-201ENST00000565277 250 ntBASIC15.65■□□□□ 0.1
TRIM4Q9C037 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM4Q9C037 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC15.65■□□□□ 0.1
TRIM4Q9C037 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM4Q9C037 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM4Q9C037 AL596087.1-201ENST00000400979 1969 ntBASIC15.65■□□□□ 0.1
TRIM4Q9C037 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM4Q9C037 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
TRIM4Q9C037 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC15.65■□□□□ 0.1
TRIM4Q9C037 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC15.65■□□□□ 0.1
TRIM4Q9C037 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM4Q9C037 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM4Q9C037 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM4Q9C037 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
TRIM4Q9C037 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC15.65■□□□□ 0.1
TRIM4Q9C037 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
TRIM4Q9C037 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM4Q9C037 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM4Q9C037 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC15.65■□□□□ 0.1
TRIM4Q9C037 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
TRIM4Q9C037 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC15.65■□□□□ 0.1
TRIM4Q9C037 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.1
TRIM4Q9C037 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
TRIM4Q9C037 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC15.64■□□□□ 0.09
TRIM4Q9C037 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
TRIM4Q9C037 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
TRIM4Q9C037 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
TRIM4Q9C037 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC15.64■□□□□ 0.09
TRIM4Q9C037 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM4Q9C037 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC15.64■□□□□ 0.09
TRIM4Q9C037 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC15.64■□□□□ 0.09
TRIM4Q9C037 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM4Q9C037 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM4Q9C037 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC15.64■□□□□ 0.09
TRIM4Q9C037 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC15.64■□□□□ 0.09
TRIM4Q9C037 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC15.64■□□□□ 0.09
TRIM4Q9C037 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC15.64■□□□□ 0.09
TRIM4Q9C037 THSD4-201ENST00000261862 3133 ntTSL 5 BASIC15.64■□□□□ 0.09
TRIM4Q9C037 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
TRIM4Q9C037 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
TRIM4Q9C037 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC15.64■□□□□ 0.09
TRIM4Q9C037 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC15.64■□□□□ 0.09
TRIM4Q9C037 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM4Q9C037 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM4Q9C037 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM4Q9C037 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM4Q9C037 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM4Q9C037 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM4Q9C037 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC15.64■□□□□ 0.09
TRIM4Q9C037 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM4Q9C037 RPL30-202ENST00000396070 440 ntTSL 2 BASIC15.64■□□□□ 0.09
TRIM4Q9C037 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC15.64■□□□□ 0.09
TRIM4Q9C037 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC15.64■□□□□ 0.09
TRIM4Q9C037 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC15.64■□□□□ 0.09
TRIM4Q9C037 GPR53P-205ENST00000457298 1084 ntBASIC15.64■□□□□ 0.09
TRIM4Q9C037 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC15.64■□□□□ 0.09
TRIM4Q9C037 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
TRIM4Q9C037 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM4Q9C037 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM4Q9C037 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM4Q9C037 IFT20-216ENST00000588477 774 ntTSL 5 BASIC15.64■□□□□ 0.09
TRIM4Q9C037 AP001059.3-201ENST00000619053 235 ntBASIC15.64■□□□□ 0.09
TRIM4Q9C037 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM4Q9C037 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM4Q9C037 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms