Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 FAM86LP-201ENST00000478302 853 ntBASIC11.99□□□□□ -0.49
CCDC140Q96MF4 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 AL096865.1-201ENST00000606796 927 ntBASIC11.99□□□□□ -0.49
CCDC140Q96MF4 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 AGAP7P-201ENST00000582299 2062 ntBASIC11.99□□□□□ -0.49
CCDC140Q96MF4 AGAP14-201ENST00000624701 2060 ntBASIC11.99□□□□□ -0.49
CCDC140Q96MF4 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 AC103702.1-201ENST00000548801 2630 ntBASIC11.99□□□□□ -0.49
CCDC140Q96MF4 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 TNRC18P2-201ENST00000417666 2714 ntBASIC11.99□□□□□ -0.49
CCDC140Q96MF4 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CCDC140Q96MF4 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 GSN-215ENST00000545652 2428 ntTSL 2 BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 SLC7A15P-201ENST00000424028 1363 ntBASIC11.98□□□□□ -0.49
CCDC140Q96MF4 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 MIR661-201ENST00000384842 89 ntBASIC11.98□□□□□ -0.49
CCDC140Q96MF4 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 MEP1AP4-201ENST00000423244 1087 ntBASIC11.98□□□□□ -0.49
CCDC140Q96MF4 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 TSPY16P-201ENST00000449843 468 ntBASIC11.98□□□□□ -0.49
CCDC140Q96MF4 RN7SL399P-201ENST00000471648 279 ntBASIC11.98□□□□□ -0.49
CCDC140Q96MF4 CD81-207ENST00000481687 890 ntTSL 2 BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 AC055876.2-201ENST00000531834 546 ntBASIC11.98□□□□□ -0.49
CCDC140Q96MF4 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC11.98□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 57.1 ms