Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 DPY19L2P5-201ENST00000456300 331 ntBASIC18.25■□□□□ 0.51
BRCA1P38398 AC244197.1-201ENST00000456494 951 ntBASIC18.25■□□□□ 0.51
BRCA1P38398 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
BRCA1P38398 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
BRCA1P38398 PES1-204ENST00000402284 2144 ntTSL 5 BASIC18.25■□□□□ 0.51
BRCA1P38398 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
BRCA1P38398 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
BRCA1P38398 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
BRCA1P38398 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC18.25■□□□□ 0.51
BRCA1P38398 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
BRCA1P38398 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
BRCA1P38398 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
BRCA1P38398 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
BRCA1P38398 OBSCN-AS1-201ENST00000295012 889 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
BRCA1P38398 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC18.24■□□□□ 0.51
BRCA1P38398 GCSHP3-201ENST00000431120 391 ntBASIC18.24■□□□□ 0.51
BRCA1P38398 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC18.24■□□□□ 0.51
BRCA1P38398 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC18.24■□□□□ 0.51
BRCA1P38398 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC18.24■□□□□ 0.51
BRCA1P38398 AC007952.4-201ENST00000573866 637 ntBASIC18.24■□□□□ 0.51
BRCA1P38398 DBP-202ENST00000593500 712 ntTSL 2 BASIC18.24■□□□□ 0.51
BRCA1P38398 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
BRCA1P38398 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
BRCA1P38398 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
BRCA1P38398 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
BRCA1P38398 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
BRCA1P38398 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
BRCA1P38398 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
BRCA1P38398 LINC02021-201ENST00000504808 1608 ntTSL 3 BASIC18.24■□□□□ 0.51
BRCA1P38398 AL513315.1-201ENST00000640756 1370 ntTSL 5 BASIC18.24■□□□□ 0.51
BRCA1P38398 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
BRCA1P38398 MARK2P16-201ENST00000605714 1723 ntBASIC18.24■□□□□ 0.51
BRCA1P38398 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC18.24■□□□□ 0.51
BRCA1P38398 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
BRCA1P38398 AC007319.1-201ENST00000453517 802 ntTSL 3 BASIC18.24■□□□□ 0.51
BRCA1P38398 CICP12-201ENST00000455801 843 ntBASIC18.24■□□□□ 0.51
BRCA1P38398 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC18.24■□□□□ 0.51
BRCA1P38398 TUBB3-208ENST00000555576 572 ntTSL 4 BASIC18.24■□□□□ 0.51
BRCA1P38398 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
BRCA1P38398 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC18.24■□□□□ 0.51
BRCA1P38398 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
BRCA1P38398 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
BRCA1P38398 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
BRCA1P38398 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
BRCA1P38398 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
BRCA1P38398 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC18.23■□□□□ 0.51
BRCA1P38398 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
BRCA1P38398 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
BRCA1P38398 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
BRCA1P38398 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC18.23■□□□□ 0.51
BRCA1P38398 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
BRCA1P38398 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
BRCA1P38398 TNRC18P3-201ENST00000441896 2691 ntBASIC18.23■□□□□ 0.51
BRCA1P38398 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
BRCA1P38398 HIST1H2AE-201ENST00000303910 509 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
BRCA1P38398 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
BRCA1P38398 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
BRCA1P38398 SFT2D2-202ENST00000367829 491 ntTSL 5 BASIC18.23■□□□□ 0.51
BRCA1P38398 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
BRCA1P38398 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC18.23■□□□□ 0.51
BRCA1P38398 AC019118.2-201ENST00000425776 718 ntTSL 5 BASIC18.23■□□□□ 0.51
BRCA1P38398 AC107463.1-201ENST00000508605 667 ntTSL 3 BASIC18.23■□□□□ 0.51
BRCA1P38398 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
BRCA1P38398 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.51
BRCA1P38398 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC18.23■□□□□ 0.51
BRCA1P38398 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC18.23■□□□□ 0.51
BRCA1P38398 AC002044.2-201ENST00000624910 970 ntBASIC18.23■□□□□ 0.51
BRCA1P38398 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
BRCA1P38398 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
BRCA1P38398 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
BRCA1P38398 ING4-207ENST00000446105 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
BRCA1P38398 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC18.23■□□□□ 0.51
BRCA1P38398 C20orf96-202ENST00000382369 1420 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
BRCA1P38398 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
BRCA1P38398 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
BRCA1P38398 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
BRCA1P38398 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
BRCA1P38398 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
BRCA1P38398 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
BRCA1P38398 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
BRCA1P38398 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
BRCA1P38398 HLA-DMA-203ENST00000395305 777 ntBASIC18.22■□□□□ 0.51
BRCA1P38398 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC18.22■□□□□ 0.51
BRCA1P38398 ATP2A1-AS1-201ENST00000561547 558 ntTSL 2 BASIC18.22■□□□□ 0.51
BRCA1P38398 AC009560.1-201ENST00000620208 434 ntBASIC18.22■□□□□ 0.51
BRCA1P38398 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
BRCA1P38398 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
BRCA1P38398 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
BRCA1P38398 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC18.22■□□□□ 0.51
BRCA1P38398 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
BRCA1P38398 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC18.22■□□□□ 0.51
BRCA1P38398 AC006449.5-201ENST00000610658 2098 ntBASIC18.22■□□□□ 0.51
BRCA1P38398 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
BRCA1P38398 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC18.22■□□□□ 0.51
BRCA1P38398 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
BRCA1P38398 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
BRCA1P38398 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
BRCA1P38398 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
BRCA1P38398 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC18.22■□□□□ 0.51
BRCA1P38398 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms