Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
COL4A1P02462 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
COL4A1P02462 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC18.52■□□□□ 0.56
COL4A1P02462 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
COL4A1P02462 HLA-DQB2-229ENST00000411527 1059 ntBASIC18.52■□□□□ 0.56
COL4A1P02462 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC18.52■□□□□ 0.56
COL4A1P02462 RN7SL720P-201ENST00000488178 304 ntBASIC18.52■□□□□ 0.56
COL4A1P02462 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC18.52■□□□□ 0.56
COL4A1P02462 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC18.52■□□□□ 0.56
COL4A1P02462 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC18.52■□□□□ 0.56
COL4A1P02462 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC18.52■□□□□ 0.56
COL4A1P02462 AC090164.2-201ENST00000611487 516 ntBASIC18.52■□□□□ 0.56
COL4A1P02462 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL4A1P02462 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL4A1P02462 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC18.52■□□□□ 0.56
COL4A1P02462 GSN-206ENST00000394353 2311 ntTSL 2 BASIC18.52■□□□□ 0.55
COL4A1P02462 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
COL4A1P02462 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC18.52■□□□□ 0.55
COL4A1P02462 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
COL4A1P02462 AC023024.2-201ENST00000623561 1993 ntBASIC18.52■□□□□ 0.55
COL4A1P02462 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
COL4A1P02462 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
COL4A1P02462 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
COL4A1P02462 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
COL4A1P02462 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
COL4A1P02462 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC18.51■□□□□ 0.55
COL4A1P02462 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL4A1P02462 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC18.51■□□□□ 0.55
COL4A1P02462 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL4A1P02462 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
COL4A1P02462 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL4A1P02462 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC18.51■□□□□ 0.55
COL4A1P02462 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL4A1P02462 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC18.51■□□□□ 0.55
COL4A1P02462 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
COL4A1P02462 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC18.51■□□□□ 0.55
COL4A1P02462 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL4A1P02462 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC18.51■□□□□ 0.55
COL4A1P02462 OARD1-204ENST00000464633 717 ntTSL 2 BASIC18.51■□□□□ 0.55
COL4A1P02462 HLA-J-204ENST00000495278 958 ntBASIC18.51■□□□□ 0.55
COL4A1P02462 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC18.51■□□□□ 0.55
COL4A1P02462 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC18.51■□□□□ 0.55
COL4A1P02462 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC18.51■□□□□ 0.55
COL4A1P02462 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL4A1P02462 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL4A1P02462 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
COL4A1P02462 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL4A1P02462 AC136621.1-201ENST00000624017 2304 ntBASIC18.51■□□□□ 0.55
COL4A1P02462 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL4A1P02462 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL4A1P02462 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC18.51■□□□□ 0.55
COL4A1P02462 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL4A1P02462 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL4A1P02462 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A1P02462 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A1P02462 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC18.5■□□□□ 0.55
COL4A1P02462 AC104073.2-201ENST00000453737 312 ntBASIC18.5■□□□□ 0.55
COL4A1P02462 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A1P02462 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC18.5■□□□□ 0.55
COL4A1P02462 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC18.5■□□□□ 0.55
COL4A1P02462 RN7SL190P-201ENST00000582519 257 ntBASIC18.5■□□□□ 0.55
COL4A1P02462 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC18.5■□□□□ 0.55
COL4A1P02462 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A1P02462 AC020658.6-201ENST00000623564 1870 ntBASIC18.5■□□□□ 0.55
COL4A1P02462 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC18.5■□□□□ 0.55
COL4A1P02462 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
COL4A1P02462 STX6-204ENST00000542060 4809 ntTSL 2 BASIC18.5■□□□□ 0.55
COL4A1P02462 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A1P02462 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A1P02462 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A1P02462 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC18.5■□□□□ 0.55
COL4A1P02462 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A1P02462 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
COL4A1P02462 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC18.5■□□□□ 0.55
COL4A1P02462 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A1P02462 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A1P02462 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC18.5■□□□□ 0.55
COL4A1P02462 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
COL4A1P02462 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A1P02462 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC18.5■□□□□ 0.55
COL4A1P02462 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A1P02462 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A1P02462 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC18.5■□□□□ 0.55
COL4A1P02462 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A1P02462 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC18.5■□□□□ 0.55
COL4A1P02462 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC18.5■□□□□ 0.55
COL4A1P02462 RN7SL769P-201ENST00000469386 295 ntBASIC18.5■□□□□ 0.55
COL4A1P02462 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC18.5■□□□□ 0.55
COL4A1P02462 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC18.5■□□□□ 0.55
COL4A1P02462 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC18.5■□□□□ 0.55
COL4A1P02462 RERG-205ENST00000537647 935 ntTSL 2 BASIC18.5■□□□□ 0.55
COL4A1P02462 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC18.5■□□□□ 0.55
COL4A1P02462 AC009779.1-201ENST00000551138 283 ntBASIC18.5■□□□□ 0.55
COL4A1P02462 AC005962.1-201ENST00000584100 773 ntBASIC18.5■□□□□ 0.55
COL4A1P02462 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC18.5■□□□□ 0.55
COL4A1P02462 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A1P02462 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
COL4A1P02462 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC18.5■□□□□ 0.55
COL4A1P02462 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A1P02462 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms