Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
HOXC11O43248 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
HOXC11O43248 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC15.71■□□□□ 0.11
HOXC11O43248 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC15.71■□□□□ 0.11
HOXC11O43248 MDH2-205ENST00000461263 648 ntTSL 2 BASIC15.71■□□□□ 0.11
HOXC11O43248 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC15.71■□□□□ 0.11
HOXC11O43248 PFN2-215ENST00000497148 743 ntTSL 4 BASIC15.71■□□□□ 0.11
HOXC11O43248 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
HOXC11O43248 ECM1P1-201ENST00000604092 1279 ntBASIC15.71■□□□□ 0.11
HOXC11O43248 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
HOXC11O43248 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC15.71■□□□□ 0.11
HOXC11O43248 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC15.71■□□□□ 0.11
HOXC11O43248 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC15.71■□□□□ 0.11
HOXC11O43248 LRRC59-203ENST00000576448 1531 ntBASIC15.71■□□□□ 0.11
HOXC11O43248 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
HOXC11O43248 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HOXC11O43248 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HOXC11O43248 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HOXC11O43248 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC15.71■□□□□ 0.11
HOXC11O43248 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
HOXC11O43248 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
HOXC11O43248 AC020907.1-201ENST00000616460 1350 ntBASIC15.71■□□□□ 0.11
HOXC11O43248 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC15.71■□□□□ 0.11
HOXC11O43248 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HOXC11O43248 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
HOXC11O43248 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HOXC11O43248 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC15.71■□□□□ 0.1
HOXC11O43248 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
HOXC11O43248 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.1
HOXC11O43248 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC15.71■□□□□ 0.1
HOXC11O43248 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
HOXC11O43248 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.1
HOXC11O43248 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
HOXC11O43248 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC15.71■□□□□ 0.1
HOXC11O43248 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC15.7■□□□□ 0.1
HOXC11O43248 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXC11O43248 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXC11O43248 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC15.7■□□□□ 0.1
HOXC11O43248 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
HOXC11O43248 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HOXC11O43248 AL513523.2-202ENST00000427283 2040 ntBASIC15.7■□□□□ 0.1
HOXC11O43248 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXC11O43248 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
HOXC11O43248 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXC11O43248 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC15.7■□□□□ 0.1
HOXC11O43248 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXC11O43248 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC15.7■□□□□ 0.1
HOXC11O43248 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
HOXC11O43248 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HOXC11O43248 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC15.7■□□□□ 0.1
HOXC11O43248 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXC11O43248 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXC11O43248 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HOXC11O43248 TPM3P8-201ENST00000330554 643 ntBASIC15.7■□□□□ 0.1
HOXC11O43248 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC15.7■□□□□ 0.1
HOXC11O43248 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
HOXC11O43248 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HOXC11O43248 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
HOXC11O43248 MIR1202-201ENST00000408529 83 ntBASIC15.7■□□□□ 0.1
HOXC11O43248 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC15.7■□□□□ 0.1
HOXC11O43248 LSM5-207ENST00000410044 687 ntTSL 3 BASIC15.7■□□□□ 0.1
HOXC11O43248 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HOXC11O43248 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HOXC11O43248 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC15.7■□□□□ 0.1
HOXC11O43248 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC15.7■□□□□ 0.1
HOXC11O43248 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC15.7■□□□□ 0.1
HOXC11O43248 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC15.7■□□□□ 0.1
HOXC11O43248 MIR6787-201ENST00000616675 61 ntBASIC15.7■□□□□ 0.1
HOXC11O43248 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC15.7■□□□□ 0.1
HOXC11O43248 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXC11O43248 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXC11O43248 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXC11O43248 KRT8P44-201ENST00000441609 1350 ntBASIC15.7■□□□□ 0.1
HOXC11O43248 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXC11O43248 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC15.7■□□□□ 0.1
HOXC11O43248 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HOXC11O43248 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC15.7■□□□□ 0.1
HOXC11O43248 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC15.7■□□□□ 0.1
HOXC11O43248 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HOXC11O43248 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXC11O43248 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC15.7■□□□□ 0.1
HOXC11O43248 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC15.7■□□□□ 0.1
HOXC11O43248 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXC11O43248 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
HOXC11O43248 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXC11O43248 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC15.7■□□□□ 0.1
HOXC11O43248 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXC11O43248 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HOXC11O43248 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXC11O43248 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HOXC11O43248 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC15.69■□□□□ 0.1
HOXC11O43248 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
HOXC11O43248 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HOXC11O43248 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
HOXC11O43248 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
HOXC11O43248 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HOXC11O43248 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
HOXC11O43248 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC15.69■□□□□ 0.1
HOXC11O43248 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC15.69■□□□□ 0.1
HOXC11O43248 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms