Protein–RNA interactions for Protein: Q9Y6V7

DDX49, Probable ATP-dependent RNA helicase DDX49, humanhuman

Known RBP Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX49Q9Y6V7 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC18.74■□□□□ 0.59
DDX49Q9Y6V7 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
DDX49Q9Y6V7 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
DDX49Q9Y6V7 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
DDX49Q9Y6V7 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
DDX49Q9Y6V7 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
DDX49Q9Y6V7 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
DDX49Q9Y6V7 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
DDX49Q9Y6V7 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC18.74■□□□□ 0.59
DDX49Q9Y6V7 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
DDX49Q9Y6V7 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC18.74■□□□□ 0.59
DDX49Q9Y6V7 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
DDX49Q9Y6V7 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
DDX49Q9Y6V7 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
DDX49Q9Y6V7 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC18.74■□□□□ 0.59
DDX49Q9Y6V7 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
DDX49Q9Y6V7 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
DDX49Q9Y6V7 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
DDX49Q9Y6V7 COPE-202ENST00000349893 948 ntTSL 2 BASIC18.74■□□□□ 0.59
DDX49Q9Y6V7 DPM2-202ENST00000373110 738 ntTSL 2 BASIC18.74■□□□□ 0.59
DDX49Q9Y6V7 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
DDX49Q9Y6V7 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC18.74■□□□□ 0.59
DDX49Q9Y6V7 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
DDX49Q9Y6V7 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
DDX49Q9Y6V7 AC005034.1-201ENST00000426657 489 ntBASIC18.74■□□□□ 0.59
DDX49Q9Y6V7 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC18.74■□□□□ 0.59
DDX49Q9Y6V7 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
DDX49Q9Y6V7 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC18.74■□□□□ 0.59
DDX49Q9Y6V7 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
DDX49Q9Y6V7 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC18.74■□□□□ 0.59
DDX49Q9Y6V7 AC190387.1-201ENST00000551683 408 ntBASIC18.74■□□□□ 0.59
DDX49Q9Y6V7 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC18.74■□□□□ 0.59
DDX49Q9Y6V7 COQ9-214ENST00000567933 882 ntTSL 3 BASIC18.74■□□□□ 0.59
DDX49Q9Y6V7 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC18.74■□□□□ 0.59
DDX49Q9Y6V7 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC18.74■□□□□ 0.59
DDX49Q9Y6V7 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC18.74■□□□□ 0.59
DDX49Q9Y6V7 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
DDX49Q9Y6V7 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC18.74■□□□□ 0.59
DDX49Q9Y6V7 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
DDX49Q9Y6V7 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
DDX49Q9Y6V7 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
DDX49Q9Y6V7 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC18.74■□□□□ 0.59
DDX49Q9Y6V7 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC18.74■□□□□ 0.59
DDX49Q9Y6V7 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
DDX49Q9Y6V7 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC18.74■□□□□ 0.59
DDX49Q9Y6V7 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
DDX49Q9Y6V7 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
DDX49Q9Y6V7 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC18.74■□□□□ 0.59
DDX49Q9Y6V7 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
DDX49Q9Y6V7 AC112693.3-201ENST00000624819 1983 ntBASIC18.73■□□□□ 0.59
DDX49Q9Y6V7 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
DDX49Q9Y6V7 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
DDX49Q9Y6V7 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
DDX49Q9Y6V7 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
DDX49Q9Y6V7 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC18.73■□□□□ 0.59
DDX49Q9Y6V7 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
DDX49Q9Y6V7 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
DDX49Q9Y6V7 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
DDX49Q9Y6V7 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC18.73■□□□□ 0.59
DDX49Q9Y6V7 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
DDX49Q9Y6V7 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
DDX49Q9Y6V7 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
DDX49Q9Y6V7 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
DDX49Q9Y6V7 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
DDX49Q9Y6V7 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC18.73■□□□□ 0.59
DDX49Q9Y6V7 HNRNPA3P1-201ENST00000401429 1139 ntBASIC18.73■□□□□ 0.59
DDX49Q9Y6V7 PP14571-201ENST00000404327 934 ntTSL 2 BASIC18.73■□□□□ 0.59
DDX49Q9Y6V7 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
DDX49Q9Y6V7 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
DDX49Q9Y6V7 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC18.73■□□□□ 0.59
DDX49Q9Y6V7 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
DDX49Q9Y6V7 HNRNPA3P5-201ENST00000455201 833 ntBASIC18.73■□□□□ 0.59
DDX49Q9Y6V7 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC18.73■□□□□ 0.59
DDX49Q9Y6V7 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC18.73■□□□□ 0.59
DDX49Q9Y6V7 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
DDX49Q9Y6V7 AC007967.4-201ENST00000614700 386 ntBASIC18.73■□□□□ 0.59
DDX49Q9Y6V7 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
DDX49Q9Y6V7 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
DDX49Q9Y6V7 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC18.73■□□□□ 0.59
DDX49Q9Y6V7 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
DDX49Q9Y6V7 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
DDX49Q9Y6V7 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
DDX49Q9Y6V7 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
DDX49Q9Y6V7 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC18.73■□□□□ 0.59
DDX49Q9Y6V7 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
DDX49Q9Y6V7 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
DDX49Q9Y6V7 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
DDX49Q9Y6V7 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC18.73■□□□□ 0.59
DDX49Q9Y6V7 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
DDX49Q9Y6V7 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
DDX49Q9Y6V7 C18orf15-201ENST00000623680 2534 ntBASIC18.72■□□□□ 0.59
DDX49Q9Y6V7 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
DDX49Q9Y6V7 LINC00528-201ENST00000600723 2160 ntBASIC18.72■□□□□ 0.59
DDX49Q9Y6V7 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
DDX49Q9Y6V7 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
DDX49Q9Y6V7 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC18.72■□□□□ 0.59
DDX49Q9Y6V7 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
DDX49Q9Y6V7 LINC00552-201ENST00000625151 2579 ntBASIC18.72■□□□□ 0.59
DDX49Q9Y6V7 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
DDX49Q9Y6V7 CICP4-201ENST00000447359 2812 ntBASIC18.72■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms