Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC29.13■■■□□ 2.25
SHROOM4Q9ULL8 AC244157.2-201ENST00000616239 1006 ntBASIC29.13■■■□□ 2.25
SHROOM4Q9ULL8 GPR39-203ENST00000622084 900 ntTSL 5 BASIC29.13■■■□□ 2.25
SHROOM4Q9ULL8 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC29.13■■■□□ 2.25
SHROOM4Q9ULL8 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC29.13■■■□□ 2.25
SHROOM4Q9ULL8 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC29.13■■■□□ 2.25
SHROOM4Q9ULL8 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC29.13■■■□□ 2.25
SHROOM4Q9ULL8 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC29.13■■■□□ 2.25
SHROOM4Q9ULL8 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC29.13■■■□□ 2.25
SHROOM4Q9ULL8 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC29.13■■■□□ 2.25
SHROOM4Q9ULL8 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC29.13■■■□□ 2.25
SHROOM4Q9ULL8 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC29.13■■■□□ 2.25
SHROOM4Q9ULL8 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC29.13■■■□□ 2.25
SHROOM4Q9ULL8 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC29.12■■■□□ 2.25
SHROOM4Q9ULL8 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
SHROOM4Q9ULL8 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC29.12■■■□□ 2.25
SHROOM4Q9ULL8 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
SHROOM4Q9ULL8 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC29.12■■■□□ 2.25
SHROOM4Q9ULL8 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
SHROOM4Q9ULL8 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
SHROOM4Q9ULL8 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC29.12■■■□□ 2.25
SHROOM4Q9ULL8 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC29.12■■■□□ 2.25
SHROOM4Q9ULL8 AL354877.1-201ENST00000424412 413 ntBASIC29.12■■■□□ 2.25
SHROOM4Q9ULL8 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC29.12■■■□□ 2.25
SHROOM4Q9ULL8 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC29.12■■■□□ 2.25
SHROOM4Q9ULL8 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC29.12■■■□□ 2.25
SHROOM4Q9ULL8 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC29.12■■■□□ 2.25
SHROOM4Q9ULL8 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC29.12■■■□□ 2.25
SHROOM4Q9ULL8 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC29.12■■■□□ 2.25
SHROOM4Q9ULL8 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
SHROOM4Q9ULL8 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC29.12■■■□□ 2.25
SHROOM4Q9ULL8 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
SHROOM4Q9ULL8 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
SHROOM4Q9ULL8 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
SHROOM4Q9ULL8 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC29.12■■■□□ 2.25
SHROOM4Q9ULL8 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
SHROOM4Q9ULL8 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
SHROOM4Q9ULL8 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC29.12■■■□□ 2.25
SHROOM4Q9ULL8 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC29.11■■■□□ 2.25
SHROOM4Q9ULL8 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC29.11■■■□□ 2.25
SHROOM4Q9ULL8 AC234782.1-201ENST00000451950 919 ntBASIC29.11■■■□□ 2.25
SHROOM4Q9ULL8 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC29.11■■■□□ 2.25
SHROOM4Q9ULL8 RN7SL181P-201ENST00000462921 277 ntBASIC29.11■■■□□ 2.25
SHROOM4Q9ULL8 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC29.11■■■□□ 2.25
SHROOM4Q9ULL8 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC29.11■■■□□ 2.25
SHROOM4Q9ULL8 FANCA-205ENST00000543736 1000 ntTSL 1 (best) BASIC29.11■■■□□ 2.25
SHROOM4Q9ULL8 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC29.11■■■□□ 2.25
SHROOM4Q9ULL8 ILF3-AS1-201ENST00000591501 1983 ntBASIC29.11■■■□□ 2.25
SHROOM4Q9ULL8 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
SHROOM4Q9ULL8 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
SHROOM4Q9ULL8 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
SHROOM4Q9ULL8 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC29.11■■■□□ 2.25
SHROOM4Q9ULL8 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC29.11■■■□□ 2.25
SHROOM4Q9ULL8 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
SHROOM4Q9ULL8 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC29.11■■■□□ 2.25
SHROOM4Q9ULL8 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC29.1■■■□□ 2.25
SHROOM4Q9ULL8 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC29.1■■■□□ 2.25
SHROOM4Q9ULL8 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC29.1■■■□□ 2.25
SHROOM4Q9ULL8 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC29.1■■■□□ 2.25
SHROOM4Q9ULL8 AC091544.8-201ENST00000619490 361 ntBASIC29.1■■■□□ 2.25
SHROOM4Q9ULL8 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC29.1■■■□□ 2.25
SHROOM4Q9ULL8 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC29.1■■■□□ 2.25
SHROOM4Q9ULL8 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC29.1■■■□□ 2.25
SHROOM4Q9ULL8 AMT-224ENST00000635808 1610 ntTSL 5 BASIC29.1■■■□□ 2.25
SHROOM4Q9ULL8 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC29.1■■■□□ 2.25
SHROOM4Q9ULL8 AC127383.1-201ENST00000444697 1800 ntBASIC29.1■■■□□ 2.25
SHROOM4Q9ULL8 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC29.1■■■□□ 2.25
SHROOM4Q9ULL8 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC29.1■■■□□ 2.25
SHROOM4Q9ULL8 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC29.1■■■□□ 2.25
SHROOM4Q9ULL8 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC29.1■■■□□ 2.25
SHROOM4Q9ULL8 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
SHROOM4Q9ULL8 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC29.1■■■□□ 2.25
SHROOM4Q9ULL8 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC29.1■■■□□ 2.25
SHROOM4Q9ULL8 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
SHROOM4Q9ULL8 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC29.1■■■□□ 2.25
SHROOM4Q9ULL8 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC29.1■■■□□ 2.25
SHROOM4Q9ULL8 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC29.1■■■□□ 2.25
SHROOM4Q9ULL8 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC29.1■■■□□ 2.25
SHROOM4Q9ULL8 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC29.1■■■□□ 2.25
SHROOM4Q9ULL8 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC29.1■■■□□ 2.25
SHROOM4Q9ULL8 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC29.1■■■□□ 2.25
SHROOM4Q9ULL8 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC29.1■■■□□ 2.25
SHROOM4Q9ULL8 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
SHROOM4Q9ULL8 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC29.1■■■□□ 2.25
SHROOM4Q9ULL8 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC29.09■■■□□ 2.25
SHROOM4Q9ULL8 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC29.09■■■□□ 2.25
SHROOM4Q9ULL8 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
SHROOM4Q9ULL8 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
SHROOM4Q9ULL8 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC29.09■■■□□ 2.25
SHROOM4Q9ULL8 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC29.09■■■□□ 2.25
SHROOM4Q9ULL8 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
SHROOM4Q9ULL8 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC29.09■■■□□ 2.25
SHROOM4Q9ULL8 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC29.09■■■□□ 2.25
SHROOM4Q9ULL8 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC29.09■■■□□ 2.25
SHROOM4Q9ULL8 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
SHROOM4Q9ULL8 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC29.09■■■□□ 2.25
SHROOM4Q9ULL8 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC29.09■■■□□ 2.25
SHROOM4Q9ULL8 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
SHROOM4Q9ULL8 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC29.09■■■□□ 2.25
SHROOM4Q9ULL8 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC29.09■■■□□ 2.25
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms