Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
MSH4O15457 AC148477.4-201ENST00000613430 1793 ntBASIC17.33■□□□□ 0.37
MSH4O15457 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
MSH4O15457 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
MSH4O15457 AC126365.1-201ENST00000578585 1514 ntBASIC17.33■□□□□ 0.37
MSH4O15457 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
MSH4O15457 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
MSH4O15457 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
MSH4O15457 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
MSH4O15457 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
MSH4O15457 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC17.33■□□□□ 0.36
MSH4O15457 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC17.33■□□□□ 0.36
MSH4O15457 AC018665.1-201ENST00000622927 1362 ntBASIC17.33■□□□□ 0.36
MSH4O15457 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
MSH4O15457 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC17.33■□□□□ 0.36
MSH4O15457 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
MSH4O15457 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
MSH4O15457 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
MSH4O15457 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
MSH4O15457 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
MSH4O15457 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC17.33■□□□□ 0.36
MSH4O15457 AC112492.5-201ENST00000421897 457 ntBASIC17.33■□□□□ 0.36
MSH4O15457 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
MSH4O15457 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
MSH4O15457 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC17.33■□□□□ 0.36
MSH4O15457 AC106886.1-201ENST00000568660 600 ntBASIC17.33■□□□□ 0.36
MSH4O15457 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC17.33■□□□□ 0.36
MSH4O15457 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC17.33■□□□□ 0.36
MSH4O15457 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC17.33■□□□□ 0.36
MSH4O15457 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC17.33■□□□□ 0.36
MSH4O15457 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC17.33■□□□□ 0.36
MSH4O15457 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC17.33■□□□□ 0.36
MSH4O15457 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
MSH4O15457 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
MSH4O15457 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
MSH4O15457 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
MSH4O15457 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
MSH4O15457 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
MSH4O15457 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC17.33■□□□□ 0.36
MSH4O15457 TP73-213ENST00000604479 1623 ntTSL 5 BASIC17.32■□□□□ 0.36
MSH4O15457 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MSH4O15457 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MSH4O15457 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC17.32■□□□□ 0.36
MSH4O15457 AL359258.3-201ENST00000622910 2331 ntBASIC17.32■□□□□ 0.36
MSH4O15457 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MSH4O15457 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
MSH4O15457 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MSH4O15457 ZBTB45P1-201ENST00000452761 1456 ntBASIC17.32■□□□□ 0.36
MSH4O15457 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
MSH4O15457 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
MSH4O15457 AC138035.3-201ENST00000622706 2791 ntBASIC17.32■□□□□ 0.36
MSH4O15457 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC17.32■□□□□ 0.36
MSH4O15457 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
MSH4O15457 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC17.32■□□□□ 0.36
MSH4O15457 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
MSH4O15457 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
MSH4O15457 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC17.32■□□□□ 0.36
MSH4O15457 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MSH4O15457 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
MSH4O15457 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
MSH4O15457 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
MSH4O15457 PGGT1BP2-201ENST00000398621 1028 ntBASIC17.32■□□□□ 0.36
MSH4O15457 RPL28-203ENST00000428193 573 ntTSL 2 BASIC17.32■□□□□ 0.36
MSH4O15457 RPL28-204ENST00000431533 590 ntTSL 2 BASIC17.32■□□□□ 0.36
MSH4O15457 BCRP2-202ENST00000447763 634 ntBASIC17.32■□□□□ 0.36
MSH4O15457 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC17.32■□□□□ 0.36
MSH4O15457 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC17.32■□□□□ 0.36
MSH4O15457 AC106760.1-201ENST00000508690 800 ntBASIC17.32■□□□□ 0.36
MSH4O15457 BCRP6-201ENST00000510112 632 ntBASIC17.32■□□□□ 0.36
MSH4O15457 BCRP7-201ENST00000511549 544 ntBASIC17.32■□□□□ 0.36
MSH4O15457 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
MSH4O15457 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC17.32■□□□□ 0.36
MSH4O15457 KRT17P8-201ENST00000540749 863 ntBASIC17.32■□□□□ 0.36
MSH4O15457 RPL28-207ENST00000558815 616 ntTSL 2 BASIC17.32■□□□□ 0.36
MSH4O15457 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC17.32■□□□□ 0.36
MSH4O15457 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
MSH4O15457 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
MSH4O15457 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
MSH4O15457 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
MSH4O15457 CELP-203ENST00000624767 2414 ntTSL 5 BASIC17.32■□□□□ 0.36
MSH4O15457 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
MSH4O15457 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MSH4O15457 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
MSH4O15457 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC17.32■□□□□ 0.36
MSH4O15457 AC022532.1-201ENST00000624563 1728 ntBASIC17.32■□□□□ 0.36
MSH4O15457 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MSH4O15457 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
MSH4O15457 SLC9A7P1-202ENST00000556476 2239 ntBASIC17.32■□□□□ 0.36
MSH4O15457 AL162727.3-201ENST00000635661 2787 ntBASIC17.32■□□□□ 0.36
MSH4O15457 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
MSH4O15457 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC17.32■□□□□ 0.36
MSH4O15457 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MSH4O15457 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC17.32■□□□□ 0.36
MSH4O15457 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MSH4O15457 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MSH4O15457 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC17.31■□□□□ 0.36
MSH4O15457 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MSH4O15457 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC17.31■□□□□ 0.36
MSH4O15457 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MSH4O15457 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms