Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 RBM39-205ENST00000397370 612 ntTSL 2 BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 GGCT-205ENST00000409436 954 ntTSL 3 BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 PPP6R2P1-201ENST00000450880 1275 ntBASIC12.62□□□□□ -0.39
FOXA2Q9Y261 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 AC069120.2-201ENST00000524091 540 ntBASIC12.62□□□□□ -0.39
FOXA2Q9Y261 AC140878.1-201ENST00000565277 250 ntBASIC12.62□□□□□ -0.39
FOXA2Q9Y261 AC051619.7-201ENST00000568314 623 ntBASIC12.62□□□□□ -0.39
FOXA2Q9Y261 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA2Q9Y261 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
FOXA2Q9Y261 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA2Q9Y261 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC12.61□□□□□ -0.39
FOXA2Q9Y261 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA2Q9Y261 ZEB1-AS1-208ENST00000607166 2503 ntBASIC12.61□□□□□ -0.39
FOXA2Q9Y261 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA2Q9Y261 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
FOXA2Q9Y261 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA2Q9Y261 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC12.61□□□□□ -0.39
FOXA2Q9Y261 AL607033.1-201ENST00000623900 1599 ntBASIC12.61□□□□□ -0.39
FOXA2Q9Y261 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC12.61□□□□□ -0.39
FOXA2Q9Y261 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
FOXA2Q9Y261 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
FOXA2Q9Y261 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA2Q9Y261 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA2Q9Y261 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
FOXA2Q9Y261 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA2Q9Y261 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
FOXA2Q9Y261 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC12.61□□□□□ -0.39
FOXA2Q9Y261 ZBED1P1-201ENST00000502364 1930 ntBASIC12.61□□□□□ -0.39
FOXA2Q9Y261 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA2Q9Y261 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA2Q9Y261 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA2Q9Y261 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA2Q9Y261 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA2Q9Y261 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC12.61□□□□□ -0.39
FOXA2Q9Y261 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA2Q9Y261 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA2Q9Y261 AZGP1P1-201ENST00000411909 902 ntBASIC12.61□□□□□ -0.39
FOXA2Q9Y261 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC12.61□□□□□ -0.39
FOXA2Q9Y261 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC12.61□□□□□ -0.39
FOXA2Q9Y261 SUOX-214ENST00000551841 906 ntTSL 3 BASIC12.61□□□□□ -0.39
FOXA2Q9Y261 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC12.61□□□□□ -0.39
FOXA2Q9Y261 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC12.61□□□□□ -0.39
FOXA2Q9Y261 PRR29-209ENST00000582540 967 ntTSL 2 BASIC12.61□□□□□ -0.39
FOXA2Q9Y261 AL589739.1-201ENST00000607720 493 ntBASIC12.61□□□□□ -0.39
FOXA2Q9Y261 AC106028.4-201ENST00000614509 607 ntBASIC12.61□□□□□ -0.39
FOXA2Q9Y261 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA2Q9Y261 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC12.61□□□□□ -0.39
FOXA2Q9Y261 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA2Q9Y261 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA2Q9Y261 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA2Q9Y261 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
FOXA2Q9Y261 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
FOXA2Q9Y261 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA2Q9Y261 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA2Q9Y261 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA2Q9Y261 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
FOXA2Q9Y261 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA2Q9Y261 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA2Q9Y261 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC12.61□□□□□ -0.39
FOXA2Q9Y261 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA2Q9Y261 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA2Q9Y261 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC12.61□□□□□ -0.39
FOXA2Q9Y261 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA2Q9Y261 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
FOXA2Q9Y261 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA2Q9Y261 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA2Q9Y261 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA2Q9Y261 GOLGA8DP-202ENST00000341390 2184 ntBASIC12.6□□□□□ -0.39
FOXA2Q9Y261 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA2Q9Y261 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 60.7 ms