Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC17.22■□□□□ 0.35
HPS3Q969F9 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HPS3Q969F9 TIMM17BP1-201ENST00000545713 516 ntBASIC17.22■□□□□ 0.35
HPS3Q969F9 NAA60-208ENST00000570819 833 ntTSL 2 BASIC17.22■□□□□ 0.35
HPS3Q969F9 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC17.22■□□□□ 0.35
HPS3Q969F9 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
HPS3Q969F9 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC17.22■□□□□ 0.35
HPS3Q969F9 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HPS3Q969F9 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
HPS3Q969F9 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
HPS3Q969F9 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HPS3Q969F9 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HPS3Q969F9 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HPS3Q969F9 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HPS3Q969F9 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC17.22■□□□□ 0.35
HPS3Q969F9 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HPS3Q969F9 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HPS3Q969F9 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HPS3Q969F9 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HPS3Q969F9 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC17.21■□□□□ 0.35
HPS3Q969F9 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC17.21■□□□□ 0.35
HPS3Q969F9 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC17.21■□□□□ 0.35
HPS3Q969F9 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HPS3Q969F9 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HPS3Q969F9 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC17.21■□□□□ 0.35
HPS3Q969F9 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HPS3Q969F9 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HPS3Q969F9 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HPS3Q969F9 AC006058.4-201ENST00000624016 1670 ntBASIC17.21■□□□□ 0.35
HPS3Q969F9 CYP2AB1P-202ENST00000454440 1456 ntBASIC17.21■□□□□ 0.35
HPS3Q969F9 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HPS3Q969F9 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.35
HPS3Q969F9 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HPS3Q969F9 AL133267.1-201ENST00000398220 340 ntBASIC17.21■□□□□ 0.35
HPS3Q969F9 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
HPS3Q969F9 KRT18P43-201ENST00000469825 1281 ntBASIC17.21■□□□□ 0.35
HPS3Q969F9 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HPS3Q969F9 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC17.21■□□□□ 0.35
HPS3Q969F9 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
HPS3Q969F9 GPX4-206ENST00000588919 803 ntTSL 2 BASIC17.21■□□□□ 0.35
HPS3Q969F9 TBCB-211ENST00000589996 724 ntTSL 3 BASIC17.21■□□□□ 0.35
HPS3Q969F9 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC17.21■□□□□ 0.35
HPS3Q969F9 AL391069.4-201ENST00000609583 481 ntBASIC17.21■□□□□ 0.35
HPS3Q969F9 RNA5-8SN1-201ENST00000610460 153 ntBASIC17.21■□□□□ 0.35
HPS3Q969F9 RNA5-8SN5-202ENST00000612463 153 ntBASIC17.21■□□□□ 0.35
HPS3Q969F9 RNA5-8SN4-201ENST00000613359 153 ntBASIC17.21■□□□□ 0.35
HPS3Q969F9 RNA5-8SN5-201ENST00000619471 153 ntBASIC17.21■□□□□ 0.35
HPS3Q969F9 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC17.21■□□□□ 0.35
HPS3Q969F9 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC17.21■□□□□ 0.35
HPS3Q969F9 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC17.21■□□□□ 0.35
HPS3Q969F9 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
HPS3Q969F9 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HPS3Q969F9 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
HPS3Q969F9 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC17.21■□□□□ 0.35
HPS3Q969F9 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC17.21■□□□□ 0.35
HPS3Q969F9 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC17.21■□□□□ 0.34
HPS3Q969F9 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
HPS3Q969F9 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC17.21■□□□□ 0.34
HPS3Q969F9 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.34
HPS3Q969F9 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HPS3Q969F9 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC17.2■□□□□ 0.34
HPS3Q969F9 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
HPS3Q969F9 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
HPS3Q969F9 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
HPS3Q969F9 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HPS3Q969F9 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HPS3Q969F9 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HPS3Q969F9 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC17.2■□□□□ 0.34
HPS3Q969F9 BTBD7P1-201ENST00000447253 1453 ntBASIC17.2■□□□□ 0.34
HPS3Q969F9 AC138969.3-201ENST00000546612 1459 ntBASIC17.2■□□□□ 0.34
HPS3Q969F9 AC138932.2-201ENST00000548268 1459 ntBASIC17.2■□□□□ 0.34
HPS3Q969F9 AC126755.4-201ENST00000549796 1459 ntBASIC17.2■□□□□ 0.34
HPS3Q969F9 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HPS3Q969F9 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HPS3Q969F9 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HPS3Q969F9 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HPS3Q969F9 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HPS3Q969F9 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HPS3Q969F9 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HPS3Q969F9 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HPS3Q969F9 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HPS3Q969F9 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC17.2■□□□□ 0.34
HPS3Q969F9 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HPS3Q969F9 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HPS3Q969F9 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC17.2■□□□□ 0.34
HPS3Q969F9 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HPS3Q969F9 AQP6-203ENST00000551733 849 ntTSL 3 BASIC17.2■□□□□ 0.34
HPS3Q969F9 AC023310.3-201ENST00000557027 670 ntBASIC17.2■□□□□ 0.34
HPS3Q969F9 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC17.2■□□□□ 0.34
HPS3Q969F9 AC100756.1-201ENST00000562736 682 ntBASIC17.2■□□□□ 0.34
HPS3Q969F9 AC138749.3-201ENST00000567691 622 ntBASIC17.2■□□□□ 0.34
HPS3Q969F9 INO80C-206ENST00000586489 594 ntTSL 3 BASIC17.2■□□□□ 0.34
HPS3Q969F9 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC17.2■□□□□ 0.34
HPS3Q969F9 AC116165.1-201ENST00000611806 668 ntBASIC17.2■□□□□ 0.34
HPS3Q969F9 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HPS3Q969F9 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
HPS3Q969F9 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC17.2■□□□□ 0.34
HPS3Q969F9 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HPS3Q969F9 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HPS3Q969F9 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms