Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 EGR1-201ENST00000239938 3138 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CXCL1P09341 ATG9A-201ENST00000361242 3130 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
CXCL1P09341 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CXCL1P09341 CASKIN2-202ENST00000433559 3950 ntTSL 2 BASIC12.12□□□□□ -0.47
CXCL1P09341 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CXCL1P09341 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CXCL1P09341 LRP8-203ENST00000354412 2553 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CXCL1P09341 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CXCL1P09341 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CXCL1P09341 CRELD1-202ENST00000383811 2696 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CXCL1P09341 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CXCL1P09341 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CXCL1P09341 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CXCL1P09341 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
CXCL1P09341 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CXCL1P09341 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CXCL1P09341 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC12.12□□□□□ -0.47
CXCL1P09341 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CXCL1P09341 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
CXCL1P09341 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CXCL1P09341 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CXCL1P09341 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC12.12□□□□□ -0.47
CXCL1P09341 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC12.12□□□□□ -0.47
CXCL1P09341 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC12.12□□□□□ -0.47
CXCL1P09341 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CXCL1P09341 PTK2-216ENST00000519881 863 ntTSL 3 BASIC12.12□□□□□ -0.47
CXCL1P09341 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC12.12□□□□□ -0.47
CXCL1P09341 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC12.12□□□□□ -0.47
CXCL1P09341 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CXCL1P09341 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CXCL1P09341 TNIP3-201ENST00000057513 2416 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
CXCL1P09341 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CXCL1P09341 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
CXCL1P09341 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
CXCL1P09341 RAVER1-206ENST00000611074 3586 ntAPPRIS P2 TSL 5 BASIC12.12□□□□□ -0.47
CXCL1P09341 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC12.12□□□□□ -0.47
CXCL1P09341 TUBGCP3-201ENST00000261965 3899 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CXCL1P09341 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC12.12□□□□□ -0.47
CXCL1P09341 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CXCL1P09341 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC12.12□□□□□ -0.47
CXCL1P09341 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC12.12□□□□□ -0.47
CXCL1P09341 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CXCL1P09341 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
CXCL1P09341 FUT3-201ENST00000303225 2584 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CXCL1P09341 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC12.12□□□□□ -0.47
CXCL1P09341 TRIB2-202ENST00000381465 2778 ntTSL 2 BASIC12.12□□□□□ -0.47
CXCL1P09341 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
CXCL1P09341 CEP131-201ENST00000269392 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
CXCL1P09341 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
CXCL1P09341 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
CXCL1P09341 EML1-203ENST00000334192 4064 ntTSL 5 BASIC12.11□□□□□ -0.47
CXCL1P09341 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC12.11□□□□□ -0.47
CXCL1P09341 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
CXCL1P09341 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
CXCL1P09341 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC12.11□□□□□ -0.47
CXCL1P09341 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
CXCL1P09341 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
CXCL1P09341 ZNF23-203ENST00000393539 3242 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
CXCL1P09341 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
CXCL1P09341 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC12.11□□□□□ -0.47
CXCL1P09341 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
CXCL1P09341 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC12.11□□□□□ -0.47
CXCL1P09341 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
CXCL1P09341 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
CXCL1P09341 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
CXCL1P09341 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
CXCL1P09341 RBBP8NL-201ENST00000252998 2793 ntAPPRIS P1 TSL 2 BASIC12.11□□□□□ -0.47
CXCL1P09341 C5orf56-206ENST00000612967 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
CXCL1P09341 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
CXCL1P09341 RPS6KA2-204ENST00000481261 2297 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
CXCL1P09341 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC12.11□□□□□ -0.47
CXCL1P09341 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
CXCL1P09341 FUT1-201ENST00000310160 4246 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
CXCL1P09341 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
CXCL1P09341 ARMC10P1-201ENST00000313754 855 ntBASIC12.11□□□□□ -0.47
CXCL1P09341 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC12.11□□□□□ -0.47
CXCL1P09341 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC12.11□□□□□ -0.47
CXCL1P09341 NME2-201ENST00000393183 568 ntTSL 2 BASIC12.11□□□□□ -0.47
CXCL1P09341 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC12.11□□□□□ -0.47
CXCL1P09341 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
CXCL1P09341 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
CXCL1P09341 AP002383.4-201ENST00000442518 975 ntBASIC12.11□□□□□ -0.47
CXCL1P09341 LINC00265-3P-201ENST00000447588 903 ntBASIC12.11□□□□□ -0.47
CXCL1P09341 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC12.11□□□□□ -0.47
CXCL1P09341 EHF-205ENST00000527935 557 ntTSL 2 BASIC12.11□□□□□ -0.47
CXCL1P09341 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC12.11□□□□□ -0.47
CXCL1P09341 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC12.11□□□□□ -0.47
CXCL1P09341 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC12.11□□□□□ -0.47
CXCL1P09341 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC12.11□□□□□ -0.47
CXCL1P09341 AC074051.2-201ENST00000565115 352 ntBASIC12.11□□□□□ -0.47
CXCL1P09341 AC012615.1-201ENST00000565797 1299 ntBASIC12.11□□□□□ -0.47
CXCL1P09341 MIR5100-201ENST00000579544 119 ntBASIC12.11□□□□□ -0.47
CXCL1P09341 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC12.11□□□□□ -0.47
CXCL1P09341 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
CXCL1P09341 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
CXCL1P09341 AP002414.4-201ENST00000589764 1148 ntBASIC12.11□□□□□ -0.47
CXCL1P09341 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC12.11□□□□□ -0.47
CXCL1P09341 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
CXCL1P09341 LINC01023-201ENST00000606054 436 ntBASIC12.11□□□□□ -0.47
CXCL1P09341 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms