Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
SPTA1P02549 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
SPTA1P02549 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SPTA1P02549 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
SPTA1P02549 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC14.03□□□□□ -0.16
SPTA1P02549 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC14.03□□□□□ -0.16
SPTA1P02549 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SPTA1P02549 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
SPTA1P02549 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
SPTA1P02549 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SPTA1P02549 AC007274.2-201ENST00000421675 662 ntBASIC14.03□□□□□ -0.16
SPTA1P02549 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
SPTA1P02549 PPOX-204ENST00000462866 473 ntTSL 5 BASIC14.03□□□□□ -0.16
SPTA1P02549 AC022858.1-201ENST00000521685 685 ntTSL 3 BASIC14.03□□□□□ -0.16
SPTA1P02549 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SPTA1P02549 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC14.03□□□□□ -0.16
SPTA1P02549 AC073352.2-201ENST00000609385 439 ntBASIC14.03□□□□□ -0.16
SPTA1P02549 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC14.03□□□□□ -0.16
SPTA1P02549 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC14.03□□□□□ -0.16
SPTA1P02549 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
SPTA1P02549 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SPTA1P02549 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SPTA1P02549 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SPTA1P02549 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SPTA1P02549 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SPTA1P02549 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC14.03□□□□□ -0.16
SPTA1P02549 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC14.03□□□□□ -0.16
SPTA1P02549 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC14.03□□□□□ -0.16
SPTA1P02549 AL592424.1-201ENST00000563624 1536 ntBASIC14.03□□□□□ -0.16
SPTA1P02549 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC14.03□□□□□ -0.16
SPTA1P02549 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SPTA1P02549 AC008132.1-202ENST00000342005 1389 ntBASIC14.03□□□□□ -0.16
SPTA1P02549 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SPTA1P02549 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC14.03□□□□□ -0.16
SPTA1P02549 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SPTA1P02549 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC14.03□□□□□ -0.16
SPTA1P02549 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SPTA1P02549 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC14.03□□□□□ -0.16
SPTA1P02549 TUBBP5-203ENST00000508529 1334 ntBASIC14.03□□□□□ -0.16
SPTA1P02549 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC14.03□□□□□ -0.16
SPTA1P02549 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC14.03□□□□□ -0.16
SPTA1P02549 GATB-213ENST00000515812 1893 ntTSL 5 BASIC14.03□□□□□ -0.16
SPTA1P02549 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SPTA1P02549 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
SPTA1P02549 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SPTA1P02549 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SPTA1P02549 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SPTA1P02549 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SPTA1P02549 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SPTA1P02549 RN7SKP214-201ENST00000364208 315 ntBASIC14.03□□□□□ -0.16
SPTA1P02549 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC14.03□□□□□ -0.16
SPTA1P02549 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SPTA1P02549 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC14.03□□□□□ -0.16
SPTA1P02549 CEP164P1-201ENST00000455142 418 ntBASIC14.03□□□□□ -0.16
SPTA1P02549 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
SPTA1P02549 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SPTA1P02549 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SPTA1P02549 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC14.03□□□□□ -0.16
SPTA1P02549 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC14.03□□□□□ -0.16
SPTA1P02549 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC14.03□□□□□ -0.16
SPTA1P02549 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SPTA1P02549 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SPTA1P02549 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC14.03□□□□□ -0.16
SPTA1P02549 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SPTA1P02549 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
SPTA1P02549 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SPTA1P02549 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC14.03□□□□□ -0.16
SPTA1P02549 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC14.03□□□□□ -0.16
SPTA1P02549 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC14.03□□□□□ -0.16
SPTA1P02549 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SPTA1P02549 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SPTA1P02549 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SPTA1P02549 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
SPTA1P02549 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
SPTA1P02549 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SPTA1P02549 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SPTA1P02549 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC14.03□□□□□ -0.16
SPTA1P02549 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC14.03□□□□□ -0.16
SPTA1P02549 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
SPTA1P02549 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC14.02□□□□□ -0.16
SPTA1P02549 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
SPTA1P02549 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SPTA1P02549 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SPTA1P02549 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC14.02□□□□□ -0.16
SPTA1P02549 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
SPTA1P02549 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SPTA1P02549 ASNA1-201ENST00000357332 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SPTA1P02549 HNRNPA1P41-201ENST00000397777 928 ntBASIC14.02□□□□□ -0.16
SPTA1P02549 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
SPTA1P02549 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
SPTA1P02549 AL365436.2-201ENST00000434112 526 ntTSL 4 BASIC14.02□□□□□ -0.16
SPTA1P02549 AC098935.1-201ENST00000446057 611 ntBASIC14.02□□□□□ -0.16
SPTA1P02549 RN7SL8P-201ENST00000461771 266 ntBASIC14.02□□□□□ -0.16
SPTA1P02549 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC14.02□□□□□ -0.16
SPTA1P02549 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC14.02□□□□□ -0.16
SPTA1P02549 IGLV3-15-201ENST00000518356 244 ntBASIC14.02□□□□□ -0.16
SPTA1P02549 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC14.02□□□□□ -0.16
SPTA1P02549 SYT17-208ENST00000568433 812 ntTSL 3 BASIC14.02□□□□□ -0.16
SPTA1P02549 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC14.02□□□□□ -0.16
SPTA1P02549 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC14.02□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms